Rh2BG215100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001691
Physical Location & Seq
Forward (+)
20436503 .. 20449645
13143 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG215100.1

Sequence Viewer

Length: 510 bp
ATGATGATTGTCCCACATAGAAATTCTAGGCCTACCGAACTGCCATTAATTTACAAAGCAAAGCGAGGCAGTTTTAAGGATACTTTATCTGATGATTTGCTGGCACTTGTTTTGAAGGTGGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAATTGTGGACCCAAAAACTAGAGAGGAGAGGCATGTTACAATTTATGTGGATGCTGGCATCCGGCCAAATGCAAACATAACTGATTTGGTGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAAGACGGATAAACCCTAACCAGATATTCACCGTGCCCAGGCCGGATGGCTGGCTCCTCCTCCAGCAGCAGCACCGCCCCCAAGCCTCTCACAAGCCTTCTTTTTCTTCTCTGGTCGGCCCGGTGCAGCCTCCACCGCTCGGCTTCAACATTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

169

Amino Acids

18.73

Weight (kDa)

9.77

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 21 - 68 1.5e-06 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 490
AciI CCGC 2 cut(s) 427, 488
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 2 cut(s) 22, 136
AfiI CCNNNNNNNGG 2 cut(s) 390, 491
AgsI TTSAA 4 cut(s) 115, 142, 319, 499
AjnI CCWGG 2 cut(s) 187, 389
AoxI GGCC 4 cut(s) 29, 284, 392, 469
ApeKI GCWGC 3 cut(s) 418, 421, 478
ApoI RAATTY 2 cut(s) 22, 136
AseI ATTAAT 1 cut(s) 47
AspS9I GGNCC 2 cut(s) 229, 470
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 322, 373
AvaII GGWCC 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 430, 433, 490
BccI CCATC 3 cut(s) 211, 332, 392
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 2 cut(s) 189, 391
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 473
BfaI CTAG 3 cut(s) 27, 240, 508
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 3 cut(s) 419, 422, 479
BlsI GCNGC 3 cut(s) 420, 423, 480
Bme1390I CCNGG 3 cut(s) 189, 391, 473
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 2 cut(s) 229, 470
BmiI GGNNCC 2 cut(s) 231, 407
BmrFI CCNGG 3 cut(s) 189, 391, 473
BmsI GCATC 2 cut(s) 262, 288
BpmI CTGGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 473
BsaJI CCNNGG 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 390, 491
BseBI CCWGG 2 cut(s) 189, 391
BseDI CCNNGG 1 cut(s) 389
BseGI GGATG 4 cut(s) 222, 277, 279, 403
BseLI CCNNNNNNNGG 2 cut(s) 390, 491
BseRI GAGGAG 3 cut(s) 260, 398, 401
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 430, 433, 490
BsgI GTGCAG 2 cut(s) 232, 497
BshFI GGCC 4 cut(s) 31, 286, 394, 471
BsiSI CCGG 3 cut(s) 283, 395, 473
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 390, 491
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 4 cut(s) 31, 286, 394, 471
Bsp1286I GDGCHC 1 cut(s) 390
BspACI CCGC 2 cut(s) 427, 488
BspANI GGCC 4 cut(s) 31, 286, 394, 471
BspLI GGNNCC 2 cut(s) 231, 407
BsrBI CCGCTC 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 189, 391
Bst4CI ACNGT 2 cut(s) 178, 385
BstC8I GCNNGC 4 cut(s) 102, 277, 324, 404
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 4 cut(s) 222, 277, 279, 403
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 2 cut(s) 189, 391
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 187, 389, 471
BstSLI GKGCMC 1 cut(s) 390
BstV1I GCAGC 3 cut(s) 430, 433, 490
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 4 cut(s) 31, 286, 394, 471
BtsCI GGATG 4 cut(s) 222, 277, 279, 403
Cac8I GCNNGC 4 cut(s) 102, 277, 324, 404
Cfr13I GGNCC 2 cut(s) 229, 470
CspCI CAANNNNNGTGG 2 cut(s) 249, 284
CviAII CATG 1 cut(s) 254
DdeI CTNAG 1 cut(s) 197
DraI TTTAAA 1 cut(s) 331
EaeI YGGCCR 1 cut(s) 284
Eco147I AGGCCT 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 187, 389
FaeI CATG 1 cut(s) 257
FaiI YATR 6 cut(s) 18, 125, 164, 255, 267, 299
FaqI GGGAC 1 cut(s) 355
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 3 cut(s) 419, 422, 479
FokI GGATG 4 cut(s) 229, 266, 284, 410
Fsp4HI GCNGC 3 cut(s) 419, 422, 479
FspBI CTAG 3 cut(s) 27, 240, 508
GluI GCNGC 3 cut(s) 419, 422, 479
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 4 cut(s) 31, 286, 394, 471
HapII CCGG 3 cut(s) 283, 395, 473
Hin1II CATG 1 cut(s) 257
HpaII CCGG 3 cut(s) 283, 395, 473
HphI GGTGA 2 cut(s) 322, 373
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 91, 337
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 109, 459
HpyCH4III ACNGT 2 cut(s) 178, 385
HpyCH4V TGCA 5 cut(s) 213, 293, 326, 353, 478
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 257
LmnI GCTCC 2 cut(s) 190, 411
Lsp1109I GCAGC 3 cut(s) 430, 433, 490
LweI GCATC 2 cut(s) 262, 288
MaeI CTAG 3 cut(s) 27, 240, 508
MaeIII GTNAC 1 cut(s) 256
MbiI CCGCTC 1 cut(s) 490
MboII GAAGA 1 cut(s) 450
MfeI CAATTG 2 cut(s) 204, 222
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 7 cut(s) 22, 48, 136, 204, 222, 261, 314
MnlI CCTC 7 cut(s) 59, 238, 243, 419, 422, 448, 492
MseI TTAA 3 cut(s) 47, 75, 330
MspI CCGG 3 cut(s) 283, 395, 473
MspR9I CCNGG 3 cut(s) 189, 391, 473
MunI CAATTG 2 cut(s) 204, 222
MvaI CCWGG 2 cut(s) 189, 391
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 473
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 2 cut(s) 231, 407
NmeAIII GCCGAG 1 cut(s) 471
NspI RCATGY 1 cut(s) 257
PceI AGGCCT 1 cut(s) 31
PkrI GCNGC 3 cut(s) 420, 423, 480
PshBI ATTAAT 1 cut(s) 47
Psp6I CCWGG 2 cut(s) 187, 389
PspGI CCWGG 2 cut(s) 187, 389
PspN4I GGNNCC 2 cut(s) 231, 407
PspPI GGNCC 2 cut(s) 229, 470
SaqAI TTAA 3 cut(s) 47, 75, 330
SatI GCNGC 3 cut(s) 419, 422, 479
Sau96I GGNCC 2 cut(s) 229, 470
ScrFI CCNGG 3 cut(s) 189, 391, 473
SduI GDGCHC 1 cut(s) 390
SetI ASST 1 cut(s) 120
SfaNI GCATC 2 cut(s) 262, 288
SinI GGWCC 1 cut(s) 229
SmiI ATTTAAAT 1 cut(s) 331
Sse9I AATT 7 cut(s) 22, 48, 136, 204, 222, 261, 314
SseBI AGGCCT 1 cut(s) 31
SsiI CCGC 2 cut(s) 427, 488
SspMI CTAG 3 cut(s) 27, 240, 508
StuI AGGCCT 1 cut(s) 31
StyD4I CCNGG 3 cut(s) 187, 389, 471
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 2 cut(s) 178, 385
TasI AATT 7 cut(s) 22, 48, 136, 204, 222, 261, 314
Tru1I TTAA 3 cut(s) 47, 75, 330
Tru9I TTAA 3 cut(s) 47, 75, 330
TseI GCWGC 3 cut(s) 418, 421, 478
TspGWI ACGGA 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 2 cut(s) 22, 136
XceI RCATGY 1 cut(s) 257
XspI CTAG 3 cut(s) 27, 240, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.