Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001691

Physical Location & Seq

Genomic Coordinates Reverse (-)

30398893 .. 30402512

Gene Structure 3620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTAAACAGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTAGCTGATGATTCGCTGGCACCTATTTTGAAGGCAGTTATAGAGAGAAAAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGTAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGTTATTCGCATCAGGACAGTCATCAGGAGCCTCCTCACCGTTGTAAGTGGAAGCAATATCTCTAAGGGAGGCGCTAGGCAATATAGCGCAGCAAGCATGATTGGTGCACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146

Pfam Domains

Protein Families

Thiolase_C Thiolase_N

Protein Analysis

111

Amino Acids

11.94

Weight (kDa)

10.52

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thiolase_N	PF00108	4 - 75	4.8e-09	Thiolase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001691)

Species	Orthologous Gene IDs
malus_domestica	MD06G1073900.v1.1 MD10G1168400.v1.1 MD15G1364500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267301 RchiOBHm_Chr6g0277641 RchiOBHm_Chr6g0277651 RchiOBHm_Chr6g0286431
rosa_laevigata	RLG00000002514
rosa_roxburghii	Rroxscaffold_1G00000350 Rroxscaffold_1G00036750 Rroxscaffold_2G00129790 Rroxscaffold_7G00199270
rosa_rugosa	Rorug01G0193100 Rorug02G0197300 Rorug02G0197300 Rorug03G0273100 Rorug05G0480700 Rorug06G0006800 Rorug06G0006900 Rorug06G0052300 Rorug07G0068800 Rorug07G0271500
rosa_samantha	Rh1BG169200 Rh1DG199700 Rh2AG202000 Rh2AG202200 Rh2BG215100 Rh2BG543900 Rh2CG206200 Rh2DG209400 Rh3CG296600 Rh3CG296700 Rh3DG292600 Rh4BG187200 Rh5BG466100 Rh5CG224300 Rh5CG487700 Rh6AG179700 Rh6BG138500 Rh6CG136000 Rh6CG169900 Rh6CG227100 Rh6CG255600 Rh6CG296100 Rh6DG122300 Rh6DG162300 Rh6DG217500 Rh6DG287900 Rh7CG193900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	94, 121
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	331
Alw44I	GTGCAC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	12
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	200, 311
ApoI	RAATTY	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	296, 311
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	250
BaeGI	GKGCMC	1 cut(s)	331
BanI	GGYRCC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	212, 323
BccI	CCATC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	168
BciVI	GTATCC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	201, 312
BlsI	GCNGC	2 cut(s)	202, 313
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	84, 251
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	212, 323
BsgI	GTGCAG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	84, 251
BspT107I	GGYRCC	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	157, 241, 262, 333
BstC8I	GCNNGC	2 cut(s)	81, 316
BstDEI	CTNAG	2 cut(s)	176, 285
BstF5I	GGATG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	212, 323
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	81, 316
CfoI	GCGC	2 cut(s)	296, 311
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	4 cut(s)	14, 68, 171, 252
CviKI_1	RGCY	4 cut(s)	14, 68, 171, 252
DdeI	CTNAG	2 cut(s)	176, 285
EcoO109I	RGGNCCY	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	322
FaiI	YATR	5 cut(s)	104, 143, 210, 306, 320
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	201, 312
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	2 cut(s)	201, 312
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	2 cut(s)	295, 310
GluI	GCNGC	2 cut(s)	201, 312
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	296, 311
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	2 cut(s)	294, 309
HinP1I	GCGC	2 cut(s)	294, 309
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188III	TCNNGA	2 cut(s)	235, 247
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	4 cut(s)	157, 241, 262, 333
HpyCH4V	TGCA	2 cut(s)	192, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	2 cut(s)	176, 285
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	2 cut(s)	294, 309
LmnI	GCTCC	2 cut(s)	169, 249
LpnPI	CCDG	7 cut(s)	65, 153, 178, 180, 220, 232, 234
Lsp1109I	GCAGC	2 cut(s)	212, 323
LweI	GCATC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	2 cut(s)	115, 183
MnlI	CCTC	4 cut(s)	38, 263, 266, 284
MseI	TTAA	2 cut(s)	5, 54
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	84, 251
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	202, 313
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	84, 251
PspPI	GGNCC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	5, 54
SatI	GCNGC	2 cut(s)	201, 312
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	2 cut(s)	70, 88
SfaNI	GCATC	1 cut(s)	240
Sse9I	AATT	2 cut(s)	115, 183
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	4 cut(s)	157, 241, 262, 333
TasI	AATT	2 cut(s)	115, 183
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	5, 54
Tru9I	TTAA	2 cut(s)	5, 54
TseI	GCWGC	2 cut(s)	200, 311
VneI	GTGCAC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	115
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.