Rh1DG199700

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001691
Physical Location & Seq
Forward (+)
39190016 .. 39210571
20556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG199700.1

Sequence Viewer

Length: 285 bp
ATGCAGTGCGTTTTGGAGGAGAGATCTTTGGAACGGTCGAGTGCAGTGGCAGTGACGGCGGTGGTTGTTGTTGCGGCGGCGCGTGCAGTTATAGAGAGAACAAATTTGAAGCCAAGTGAAATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTATGTGGATGATGGCATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

94

Amino Acids

9.94

Weight (kDa)

5.3

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 40 - 94 5.6e-14 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 82
AciI CCGC 3 cut(s) 59, 74, 77
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 109, 217
AjnI CCWGG 1 cut(s) 264
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 127
BccI CCATC 3 cut(s) 167, 230, 269
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 23
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 186
BmtI GCTAGC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 266
BseGI GGATG 2 cut(s) 175, 177
BseLI CCNNNNNNNGG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 32, 158
BsgI GTGCAG 2 cut(s) 63, 105
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 184
BsiEI CGRYCG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 3 cut(s) 59, 74, 77
BspANI GGCC 1 cut(s) 184
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 253
BspOI GCTAGC 1 cut(s) 264
BsrI ACTGG 1 cut(s) 142
BssMI GATC 1 cut(s) 23
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 3 cut(s) 84, 222, 262
BstF5I GGATG 2 cut(s) 175, 177
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 3 cut(s) 56, 83, 257
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 175, 177
BtsI GCAGTG 3 cut(s) 11, 51, 57
BtsIMutI CAGTG 3 cut(s) 11, 51, 57
Cac8I GCNNGC 3 cut(s) 84, 222, 262
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 2 cut(s) 152, 196
CviJI RGCY 4 cut(s) 112, 184, 220, 264
CviKI_1 RGCY 4 cut(s) 112, 184, 220, 264
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
DraI TTTAAA 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 264
FaeI CATG 2 cut(s) 155, 199
FaiI YATR 4 cut(s) 92, 153, 165, 197
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 151, 195
Fnu4HI GCNGC 2 cut(s) 75, 78
FokI GGATG 2 cut(s) 164, 182
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 75, 78
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 155, 199
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HpaII CCGG 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 6 cut(s) 4, 44, 86, 191, 224, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 83, 257
Hsp92II CATG 2 cut(s) 155, 199
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 123, 194, 234, 237, 251, 278
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 52, 154
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MflI RGATCY 1 cut(s) 23
MluCI AATT 4 cut(s) 103, 120, 159, 212
MnlI CCTC 3 cut(s) 10, 136, 141
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 56, 83, 257
NdeII GATC 1 cut(s) 23
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 2 cut(s) 155, 199
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 2 cut(s) 76, 79
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 23
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 266
SetI ASST 1 cut(s) 270
SfaNI GCATC 1 cut(s) 186
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 1 cut(s) 127
SmiI ATTTAAAT 1 cut(s) 229
Sse9I AATT 4 cut(s) 103, 120, 159, 212
SsiI CCGC 3 cut(s) 59, 74, 77
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 264
SwaI ATTTAAAT 1 cut(s) 229
TaaI ACNGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 38
TasI AATT 4 cut(s) 103, 120, 159, 212
TauI GCSGC 2 cut(s) 77, 80
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 51, 57
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 2 cut(s) 51, 57
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.