Rh2BG543900

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001691
Physical Location & Seq
Forward (+)
75221780 .. 75225775
3996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG543900.1

Sequence Viewer

Length: 429 bp
ATGTCTTTTGATAATGTTTATACCTTCCCTGTGCTTAATATTGCCTTGAAAATCATGTTAAACAGGGCCTACCGAACTGCCATTTACAAAGAAAAGCGAGGCGGTTTTAAGGATACTTTAGCTGATGATTTGCTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTAGCTCACTTAGAGCAATTGAGCGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGGGTTCTTGGACTACTTGGATTTTCTGCCTGGAATTGAAGGGCTTGAGGGAGATGAAGGCGTGCCTATGGATTTGAATGTTGCTTCGGCATCGGAGGAGGAGTCGTCAGCGGCGACGGCGGTGATTCTGGCGACAGAGTTGAAGCTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

142

Amino Acids

15.37

Weight (kDa)

4.56

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 22 - 92 4.6e-11 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 136
AciI CCGC 3 cut(s) 102, 386, 395
AcsI RAATTY 1 cut(s) 169
AgsI TTSAA 6 cut(s) 49, 148, 175, 314, 352, 418
AjnI CCWGG 2 cut(s) 274, 304
AluBI AGCT 3 cut(s) 122, 225, 421
AluI AGCT 3 cut(s) 122, 225, 421
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 169
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 409
BanI GGYRCC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 408
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 2 cut(s) 276, 306
BciVI GTATCC 1 cut(s) 106
BfaI CTAG 2 cut(s) 222, 427
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 2 cut(s) 255, 387
BlsI GCNGC 2 cut(s) 256, 388
Bme1390I CCNGG 2 cut(s) 276, 306
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 276, 306
BmsI GCATC 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 275
BsaXI ACNNNNNCTCC 4 cut(s) 362, 365, 392, 395
BseBI CCWGG 2 cut(s) 276, 306
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 386, 389
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 421
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 136
BsnI GGCC 1 cut(s) 68
BspACI CCGC 3 cut(s) 102, 386, 395
BspANI GGCC 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 275
Bst2UI CCWGG 2 cut(s) 276, 306
Bst4CI ACNGT 1 cut(s) 211
BstC8I GCNNGC 2 cut(s) 135, 338
BstDEI CTNAG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 246
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 2 cut(s) 276, 306
BstSCI CCNGG 2 cut(s) 274, 304
BstV1I GCAGC 1 cut(s) 266
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 135, 338
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 66
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 68, 122, 225, 319, 421, 426
CviKI_1 RGCY 6 cut(s) 68, 122, 225, 319, 421, 426
DdeI CTNAG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 274, 304
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 21, 56, 158, 197, 264, 344
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 255, 387
FokI GGATG 1 cut(s) 262
Fsp4HI GCNGC 2 cut(s) 255, 387
FspBI CTAG 2 cut(s) 222, 427
GlaI GCGC 1 cut(s) 245
GluI GCNGC 2 cut(s) 255, 387
GsaI CCCAGC 1 cut(s) 425
HaeIII GGCC 1 cut(s) 68
HhaI GCGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 2 cut(s) 377, 400
HphI GGTGA 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 4 cut(s) 34, 142, 308, 326
HpyCH4III ACNGT 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 374
MaeI CTAG 2 cut(s) 222, 427
MfeI CAATTG 1 cut(s) 237
MluCI AATT 3 cut(s) 169, 237, 309
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 4 cut(s) 92, 316, 364, 367
MseI TTAA 3 cut(s) 36, 59, 108
MspA1I CMGCKG 1 cut(s) 386
MspR9I CCNGG 2 cut(s) 276, 306
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 2 cut(s) 276, 306
MwoI GCNNNNNNNGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 2 cut(s) 256, 388
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 274, 304
PspFI CCCAGC 1 cut(s) 421
PspGI CCWGG 2 cut(s) 274, 304
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 36, 59, 108
SatI GCNGC 2 cut(s) 255, 387
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 276, 306
SetI ASST 5 cut(s) 26, 124, 142, 227, 423
SfaNI GCATC 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 3 cut(s) 169, 237, 309
SsiI CCGC 3 cut(s) 102, 386, 395
SspI AATATT 1 cut(s) 40
SspMI CTAG 2 cut(s) 222, 427
StyD4I CCNGG 2 cut(s) 274, 304
TaaI ACNGT 1 cut(s) 211
TasI AATT 3 cut(s) 169, 237, 309
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 3 cut(s) 36, 59, 108
Tru9I TTAA 3 cut(s) 36, 59, 108
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 345
XapI RAATTY 1 cut(s) 169
XspI CTAG 2 cut(s) 222, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.