Rorug01G0193100

Belongs to the thiolase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
26920312 .. 26922217
1906 bp
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UTR
Exon/CDS
Intron
Rorug01G0193100.1

Sequence Viewer

Length: 768 bp
ATGATTGTTTATGGGAGTAACGGTCGAGGTTGCTGGGGACTCATAAGTACTTCTGCATGCCCAGGTGGAAAGTTCTATTGTCGAAATGTGGGTCACGCTCCTCTCCAGCTATTTTCATCCAGAGTCAATGATGGTATTTGTGACTGCTGTGATGGGAGTGATGAATATGATGGTAAAGTAAATTGCCCAAATACATGTTGGGAGGCTGGGAAAGTGGCTAGAGATAAGCTGAAAAAGAAGATTGCTACTTACCAAGAGGGAGTTGCAATACGAAAACAGGAAGTTGAACAAGCAAAAGTAGCTATGGCTAAAGACGAGGCAGAACTATCAAAGCTGCAAAGTGACCAGAAAACACTAAAGCGACTTGTTGAACAGCTCAGAGAGCGTAAAGAACAAATAGAAAAGGCTGAGGAGAGGGAACGGTTACAGAAAGAAAAAGAAGAGCAGGAGAAAAAAGAAGCAGAAGAGAAAGCTAAGCAGGAGAACAGTGGTGGTGAAGACCAGGAGAAAACTAAAGCTGAAGAGGAAGCTAAGAAGGAAAAGGGTGAGGATGTGGAGGATGGCAGTGCTGAAGACAAACCTATAGAAAGTCAACATGATGATAATGTTGGGAATTTGGACGATTCTCATTCATACCAGGATACAGCAGAGAAACATGATGACTTAGGTACTAAAGATGGTAGTATTGATACTCCTGAACATATAGGGTCTCTGGTTGATGGTGTACAACAGGTAAACCAAGACTTTGAACTTGATATTTTGAGATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

255

Amino Acids

28.57

Weight (kDa)

4.81

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRKCSH-like PF12999 17 - 114 2.9e-20 Glucosidase II beta subunit-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 613
AcuI CTGAAG 2 cut(s) 540, 591
AfaI GTAC 3 cut(s) 49, 670, 726
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 287, 371, 749
AjnI CCWGG 3 cut(s) 61, 501, 636
AluBI AGCT 8 cut(s) 109, 229, 302, 334, 376, 473, 518, 530
AluI AGCT 8 cut(s) 109, 229, 302, 334, 376, 473, 518, 530
Alw26I GTCTC 1 cut(s) 714
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 613
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
AsuHPI GGTGA 2 cut(s) 506, 557
BbsI GAAGAC 2 cut(s) 504, 579
BbvCI CCTCAGC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 321
BccI CCATC 6 cut(s) 125, 146, 164, 554, 671, 713
BciT130I CCWGG 3 cut(s) 63, 503, 638
BciVI GTATCC 1 cut(s) 634
BcoDI GTCTC 1 cut(s) 714
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 634
BisI GCNGC 1 cut(s) 335
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 336
BmcAI AGTACT 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 63, 503, 638
BmrFI CCNGG 3 cut(s) 63, 503, 638
BpiI GAAGAC 2 cut(s) 504, 579
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
BseBI CCWGG 3 cut(s) 63, 503, 638
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 3 cut(s) 116, 556, 565
BseMII CTCAG 2 cut(s) 391, 399
BseRI GAGGAG 2 cut(s) 90, 425
BseXI GCAGC 1 cut(s) 321
BseYI CCCAGC 2 cut(s) 33, 206
Bsh1285I CGRYCG 1 cut(s) 25
BsiEI CGRYCG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 714
BsmFI GGGAC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 714
Bsp1407I TGTACA 1 cut(s) 724
Bsp1720I GCTNAGC 1 cut(s) 474
BspCNI CTCAG 2 cut(s) 390, 400
BspQI GCTCTTC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 714
BsrGI TGTACA 1 cut(s) 724
BssECI CCNNGG 1 cut(s) 61
Bst2UI CCWGG 3 cut(s) 63, 503, 638
Bst4CI ACNGT 3 cut(s) 23, 423, 488
Bst6I CTCTTC 3 cut(s) 435, 459, 516
BstAUI TGTACA 1 cut(s) 724
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 5 cut(s) 377, 408, 474, 531, 664
BstF5I GGATG 3 cut(s) 116, 556, 565
BstMAI GTCTC 1 cut(s) 714
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 299, 382
BstNI CCWGG 3 cut(s) 63, 503, 638
BstNSI RCATGY 2 cut(s) 60, 198
BstSCI CCNGG 3 cut(s) 61, 501, 636
BstSFI CTRYAG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 321
BstV2I GAAGAC 2 cut(s) 504, 579
BsuI GTATCC 1 cut(s) 634
BtsCI GGATG 3 cut(s) 116, 556, 565
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 2 cut(s) 493, 571
Cac8I GCNNGC 1 cut(s) 58
Csp6I GTAC 3 cut(s) 48, 669, 725
CviAII CATG 4 cut(s) 57, 195, 596, 656
CviQI GTAC 3 cut(s) 48, 669, 725
DdeI CTNAG 5 cut(s) 377, 408, 474, 531, 664
Eam1104I CTCTTC 3 cut(s) 435, 459, 516
EarI CTCTTC 3 cut(s) 435, 459, 516
Eco31I GGTCTC 1 cut(s) 714
Eco57I CTGAAG 2 cut(s) 540, 591
EcoRII CCWGG 3 cut(s) 61, 501, 636
FaeI CATG 4 cut(s) 60, 198, 599, 659
FaqI GGGAC 1 cut(s) 51
FatI CATG 4 cut(s) 56, 194, 595, 655
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 3 cut(s) 103, 563, 572
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 335
GsaI CCCAGC 2 cut(s) 37, 210
GsuI CTGGAG 1 cut(s) 89
Hin1II CATG 4 cut(s) 60, 198, 599, 659
HincII GTYRAC 1 cut(s) 593
HindII GTYRAC 1 cut(s) 593
HinfI GANTC 3 cut(s) 39, 123, 623
HphI GGTGA 2 cut(s) 506, 557
Hpy166II GTNNAC 3 cut(s) 593, 725, 736
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 2 cut(s) 120, 695
Hpy8I GTNNAC 3 cut(s) 593, 725, 736
HpyAV CCTTC 1 cut(s) 529
HpyCH4III ACNGT 3 cut(s) 23, 423, 488
HpyCH4V TGCA 3 cut(s) 56, 266, 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 382
HpyF3I CTNAG 5 cut(s) 377, 408, 474, 531, 664
Hsp92II CATG 4 cut(s) 60, 198, 599, 659
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 321
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 5 cut(s) 17, 92, 140, 341, 423
MboII GAAGA 6 cut(s) 250, 452, 476, 509, 533, 584
MluCI AATT 2 cut(s) 181, 613
MlyI GAGTC 2 cut(s) 33, 132
MspR9I CCNGG 3 cut(s) 63, 503, 638
MvaI CCWGG 3 cut(s) 63, 503, 638
MwoI GCNNNNNNNGC 2 cut(s) 299, 382
NlaIII CATG 4 cut(s) 60, 198, 599, 659
NmuCI GTSAC 3 cut(s) 92, 140, 341
NspI RCATGY 2 cut(s) 60, 198
PaeI GCATGC 1 cut(s) 60
PciI ACATGT 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 623
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 2 cut(s) 33, 131
PpsI GAGTC 2 cut(s) 33, 131
PscI ACATGT 1 cut(s) 194
Psp6I CCWGG 3 cut(s) 61, 501, 636
PspFI CCCAGC 2 cut(s) 33, 206
PspGI CCWGG 3 cut(s) 61, 501, 636
RsaI GTAC 3 cut(s) 49, 670, 726
RsaNI GTAC 3 cut(s) 48, 669, 725
SapI GCTCTTC 1 cut(s) 435
SatI GCNGC 1 cut(s) 335
ScaI AGTACT 1 cut(s) 49
SchI GAGTC 2 cut(s) 33, 132
ScrFI CCNGG 3 cut(s) 63, 503, 638
SfcI CTRYAG 1 cut(s) 582
SphI GCATGC 1 cut(s) 60
Sse9I AATT 2 cut(s) 181, 613
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 61, 501, 636
TaaI ACNGT 3 cut(s) 23, 423, 488
TaqI TCGA 2 cut(s) 25, 82
TasI AATT 2 cut(s) 181, 613
TatI WGTACW 2 cut(s) 47, 724
TfiI GAWTC 1 cut(s) 623
TscAI CASTG 2 cut(s) 493, 571
TseFI GTSAC 3 cut(s) 92, 140, 341
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 3 cut(s) 92, 140, 341
TspDTI ATGAA 3 cut(s) 105, 177, 621
TspRI CASTG 2 cut(s) 493, 571
XapI RAATTY 1 cut(s) 613
XceI RCATGY 2 cut(s) 60, 198
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XspI CTAG 1 cut(s) 219
ZrmI AGTACT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.