Rh5BG466100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001691
Physical Location & Seq
Reverse (-)
74274692 .. 74279446
4755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG466100.1

Sequence Viewer

Length: 282 bp
ATGGATGTCTGGCAATACGGAGCTCTATGGGATGTAAAACATGTAGATTGCAGACGAAATTCACAAAGCATTGTCTTAGAAGACAATGAACCGGGAATCAGTATTGAAGTTCCAAATATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGGCATTCGGCCAATTGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAATAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

93

Amino Acids

10.24

Weight (kDa)

4.8

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 43 - 93 8.1e-13 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 2 cut(s) 58, 156
AfiI CCNNNNNNNGG 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 2 cut(s) 107, 214
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
AoxI GGCC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 58, 156
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 93
AsuNHI GCTAGC 1 cut(s) 257
AvaII GGWCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 25
BccI CCATC 3 cut(s) 164, 227, 266
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 1 cut(s) 93
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 246
Bme1390I CCNGG 2 cut(s) 93, 263
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 93, 263
BmtI GCTAGC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 263
BseGI GGATG 3 cut(s) 10, 37, 172
BseLI CCNNNNNNNGG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 25
BspANI GGCC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 219, 259
BstDEI CTNAG 1 cut(s) 76
BstF5I GGATG 3 cut(s) 10, 37, 172
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 263
BstNSI RCATGY 2 cut(s) 44, 152
BstSCI CCNGG 2 cut(s) 91, 261
BstSFI CTRYAG 1 cut(s) 246
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 10, 37, 172
Cac8I GCNNGC 2 cut(s) 219, 259
Cfr13I GGNCC 1 cut(s) 124
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 3 cut(s) 41, 149, 193
CviJI RGCY 4 cut(s) 23, 181, 217, 261
CviKI_1 RGCY 4 cut(s) 23, 181, 217, 261
DdeI CTNAG 1 cut(s) 76
DraI TTTAAA 1 cut(s) 226
EaeI YGGCCR 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 3 cut(s) 44, 152, 196
FaiI YATR 5 cut(s) 28, 42, 150, 162, 194
FaqI GGGAC 1 cut(s) 250
FatI CATG 3 cut(s) 40, 148, 192
FokI GGATG 3 cut(s) 17, 44, 179
FriOI GRGCYC 1 cut(s) 25
FspBI CTAG 1 cut(s) 258
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 92
Hin1II CATG 3 cut(s) 44, 152, 196
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 92
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 51, 188, 221, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 76
Hsp92II CATG 3 cut(s) 44, 152, 196
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 105, 120, 231, 234, 248, 275
MaeI CTAG 1 cut(s) 258
MboII GAAGA 1 cut(s) 92
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 4 cut(s) 58, 156, 183, 209
MnlI CCTC 2 cut(s) 133, 138
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 93, 263
MunI CAATTG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 1 cut(s) 93
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 3 cut(s) 44, 152, 196
NlaIV GGNNCC 1 cut(s) 126
NspI RCATGY 2 cut(s) 44, 152
PciI ACATGT 1 cut(s) 40
PctI GAATGC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 134
PscI ACATGT 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 124
PstI CTGCAG 1 cut(s) 250
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 93, 263
SduI GDGCHC 1 cut(s) 25
SetI ASST 2 cut(s) 25, 267
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 124
SmiI ATTTAAAT 1 cut(s) 226
Sse9I AATT 4 cut(s) 58, 156, 183, 209
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 91, 261
SwaI ATTTAAAT 1 cut(s) 226
TasI AATT 4 cut(s) 58, 156, 183, 209
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 102
TspGWI ACGGA 1 cut(s) 33
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 2 cut(s) 58, 156
XceI RCATGY 2 cut(s) 44, 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 269
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.