Rh4BG187200

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001691
Physical Location & Seq
Reverse (-)
32642592 .. 32643716
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG187200.1

Sequence Viewer

Length: 216 bp
ATGGCTTTTCTTCCCTTTTTCCCATTCATTCAGCTCAACCGGGATCGAGTTGAGAACTTCTCTGGGCACCCCAAAGTTCTTCATTGTTCATTAATTGGGAGATGCTTCAAACAGATAATGATTGAGAAAACCAATCTGAATCCCATGGAAGTTGGGGATATTGTTGTCGGTACCGTGTTGGCTCCAGGTCTCAAAGAGCTAGCAAATGCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

71

Amino Acids

7.88

Weight (kDa)

7.84

Isoelectric Point (pI)

18.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 2 cut(s) 66, 170
AclWI GGATC 1 cut(s) 51
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 2 cut(s) 34, 199
AluI AGCT 2 cut(s) 34, 199
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 51
AseI ATTAAT 1 cut(s) 92
Asp718I GGTACC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 41
AsuNHI GCTAGC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 69
BanI GGYRCC 2 cut(s) 66, 170
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 200
Bme1390I CCNGG 2 cut(s) 41, 186
BmiI GGNNCC 3 cut(s) 68, 172, 183
BmrFI CCNGG 2 cut(s) 41, 186
BmsI GCATC 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 144
BseSI GKGCMC 1 cut(s) 69
BshNI GGYRCC 2 cut(s) 66, 170
BsiSI CCGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 1 cut(s) 43
Bsp19I CCATGG 1 cut(s) 144
BspLI GGNNCC 3 cut(s) 68, 172, 183
BspOI GCTAGC 1 cut(s) 203
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 66, 170
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 201
BstDSI CCRYGG 1 cut(s) 144
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 39, 184
BstSLI GKGCMC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 145
CviJI RGCY 4 cut(s) 5, 34, 182, 199
CviKI_1 RGCY 4 cut(s) 5, 34, 182, 199
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 148
FaiI YATR 1 cut(s) 146
FatI CATG 1 cut(s) 144
FspBI CTAG 1 cut(s) 200
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 1 cut(s) 40
Hin1II CATG 1 cut(s) 148
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 209
Hsp92II CATG 1 cut(s) 148
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 5 cut(s) 48, 53, 171, 195, 198
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 200
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 1 cut(s) 93
MseI TTAA 1 cut(s) 92
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 2 cut(s) 41, 186
MvaI CCWGG 1 cut(s) 186
NciI CCSGG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 144
NdeII GATC 1 cut(s) 43
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 3 cut(s) 68, 172, 183
PfeI GAWTC 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 3 cut(s) 68, 172, 183
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 41, 186
SduI GDGCHC 1 cut(s) 69
SetI ASST 3 cut(s) 36, 190, 201
SfaNI GCATC 1 cut(s) 92
SgeI CNNG 9 cut(s) 52, 53, 59, 75, 157, 187, 197, 198, 212
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 39, 184
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 46
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 16, 71, 78
VspI ATTAAT 1 cut(s) 92
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.