Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001691

Physical Location & Seq

Genomic Coordinates Reverse (-)

45596741 .. 45609579

Gene Structure 12839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGACTGATTTGGCGAAATTGAAGCCTACATTTAAATCGGATGGGACAACAACTGCAGTTAGAATTCTGTTATCTGTATACTCTTTATTTAACCAAACCTCTCGCGAAAACCAAGGATATGAGACTACTCCAAAAGATATCCTGGAAAGGCTAAAAAGGCCGGAGATTGAGGAGAAGAAGGTGAAGATGGAAAGGATTCAAGGATCAGATGAGGAATTAAAAGTTAGATCTTTCTTTAAAAGAATTGTTGGCACCGTTGTACGTTCTGTGCAAGAGGATCAAAAGGAGCAAGATATCAAAAACATGGAAGCAGAAGTGCAATCAATAGAAGTAGCTGTCCTAGAGATTTTGGTATCGGCGGAGCGTATATGGGATGACTACTTGGGAATTGGTCAAGGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0001101 GO:0001882 GO:0001883 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006950 GO:0007275 GO:0008150 GO:0008289 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0010033 GO:0010228 GO:0010427 GO:0012505 GO:0016020 GO:0017076 GO:0019001 GO:0019840 GO:0019899 GO:0022414 GO:0031406 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033293 GO:0033554 GO:0033993 GO:0035639 GO:0036094 GO:0042175 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051020 GO:0051716 GO:0061458 GO:0070417 GO:0071944 GO:0097159 GO:0097305 GO:0097367 GO:0098827 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABA_GPCR GPHR_N

Protein Analysis

134

Amino Acids

15.44

Weight (kDa)

5.39

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001691)

Species	Orthologous Gene IDs
malus_domestica	MD06G1073900.v1.1 MD10G1168400.v1.1 MD15G1364500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267301 RchiOBHm_Chr6g0277641 RchiOBHm_Chr6g0277651 RchiOBHm_Chr6g0286431
rosa_laevigata	RLG00000002514
rosa_roxburghii	Rroxscaffold_1G00000350 Rroxscaffold_1G00036750 Rroxscaffold_2G00129790 Rroxscaffold_7G00199270
rosa_rugosa	Rorug01G0193100 Rorug02G0197300 Rorug02G0197300 Rorug03G0273100 Rorug05G0480700 Rorug06G0006800 Rorug06G0006900 Rorug06G0052300 Rorug07G0068800 Rorug07G0271500
rosa_samantha	Rh1BG169200 Rh1DG199700 Rh2AG202000 Rh2AG202200 Rh2BG215100 Rh2BG543900 Rh2CG206200 Rh2DG209400 Rh3CG296600 Rh3CG296700 Rh3DG292600 Rh4BG187200 Rh5BG466100 Rh5CG224300 Rh5CG487700 Rh6AG179700 Rh6BG138500 Rh6CG136000 Rh6CG169900 Rh6CG227100 Rh6CG255600 Rh6CG296100 Rh6DG122300 Rh6DG162300 Rh6DG217500 Rh6DG287900 Rh7CG193900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	2 cut(s)	211, 285
AcsI	RAATTY	1 cut(s)	63
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	22, 200
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	211, 285
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	63
Asp700I	GAANNNNTTC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	251
BccI	CCATC	2 cut(s)	35, 181
BciT130I	CCWGG	1 cut(s)	143
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	54
BglII	AGATCT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	46, 379
BseRI	GAGGAG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	203, 227, 277
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	253
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	2 cut(s)	211, 285
BspT107I	GGYRCC	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	203, 227, 277
BssNAI	GTATAC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	46, 379
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	206, 230, 280
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	3 cut(s)	203, 227, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BstZ17I	GTATAC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	160
BtsCI	GGATG	2 cut(s)	46, 379
BtuMI	TCGCGA	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	304
CviJI	RGCY	4 cut(s)	25, 151, 160, 335
CviKI_1	RGCY	4 cut(s)	25, 151, 160, 335
CviQI	GTAC	1 cut(s)	260
DpnI	GATC	3 cut(s)	205, 229, 279
DpnII	GATC	3 cut(s)	203, 227, 277
DraI	TTTAAA	2 cut(s)	34, 238
EciI	GGCGGA	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	112
Eco32I	GATATC	2 cut(s)	139, 295
EcoRI	GAATTC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	141
EcoRV	GATATC	2 cut(s)	139, 295
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	307
FaiI	YATR	5 cut(s)	79, 120, 305, 368, 370
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	78
FokI	GGATG	2 cut(s)	53, 386
FspBI	CTAG	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	40, 208
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	262, 400
HpyCH4V	TGCA	3 cut(s)	56, 271, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpySE526I	ACGT	2 cut(s)	262, 400
Hsp92II	CATG	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	203, 227, 277
LmnI	GCTCC	2 cut(s)	286, 361
LpnPI	CCDG	3 cut(s)	128, 155, 174
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	2 cut(s)	262, 400
MalI	GATC	3 cut(s)	205, 229, 279
MboI	GATC	3 cut(s)	203, 227, 277
MboII	GAAGA	2 cut(s)	187, 196
MflI	RGATCY	1 cut(s)	227
MluCI	AATT	5 cut(s)	17, 63, 215, 243, 387
MnlI	CCTC	4 cut(s)	109, 163, 205, 268
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	5 cut(s)	33, 90, 218, 237, 403
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	203, 227, 277
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	253
NruI	TCGCGA	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	227
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	5 cut(s)	33, 90, 218, 237, 403
Sau3AI	GATC	3 cut(s)	203, 227, 277
ScrFI	CCNGG	1 cut(s)	143
SetI	ASST	5 cut(s)	101, 183, 265, 337, 403
SfcI	CTRYAG	1 cut(s)	54
SmiI	ATTTAAAT	1 cut(s)	34
Sse9I	AATT	5 cut(s)	17, 63, 215, 243, 387
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	1 cut(s)	112
SwaI	ATTTAAAT	1 cut(s)	34
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	265, 403
TasI	AATT	5 cut(s)	17, 63, 215, 243, 387
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	5 cut(s)	33, 90, 218, 237, 403
Tru9I	TTAA	5 cut(s)	33, 90, 218, 237, 403
XapI	RAATTY	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.