Rh2CG206200

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001691
Physical Location & Seq
Forward (+)
20069774 .. 20075107
5334 bp
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UTR
Exon/CDS
Intron
Rh2CG206200.1

Sequence Viewer

Length: 327 bp
ATGAGAAATTTGTTTAATCTTTTGCAATCTATATCTTTTGATAATGCTTATACCTTCCCTGTGCTTAATATTGCCTTGAAAATCATGTTAAACAGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCTGTTTTAAGGATACTTTAGCTGATGATTTGCTGGCACTTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGGAGGTGCCCTCAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

108

Amino Acids

11.84

Weight (kDa)

9.34

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 32 - 103 9.3e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 7, 199
AgsI TTSAA 3 cut(s) 79, 178, 205
AjnI CCWGG 2 cut(s) 250, 304
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 7, 199
AspS9I GGNCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 296
BccI CCATC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 2 cut(s) 252, 306
BciVI GTATCC 1 cut(s) 136
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 2 cut(s) 252, 306
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 252, 306
BplI GAGNNNNNCTC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 327
BseBI CCWGG 2 cut(s) 252, 306
BseGI GGATG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 311
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 316
BspANI GGCC 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 311
Bst2UI CCWGG 2 cut(s) 252, 306
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 285
BstNI CCWGG 2 cut(s) 252, 306
BstSCI CCNGG 2 cut(s) 250, 304
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 296
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 98, 132, 152, 255
CviKI_1 RGCY 4 cut(s) 98, 132, 152, 255
DdeI CTNAG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 2 cut(s) 250, 304
FaeI CATG 1 cut(s) 88
FaiI YATR 6 cut(s) 32, 51, 86, 188, 227, 294
FatI CATG 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 64, 172
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 2 cut(s) 25, 276
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 1 cut(s) 88
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 8 cut(s) 72, 79, 149, 237, 262, 264, 291, 318
Lsp1109I GCAGC 1 cut(s) 296
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 3 cut(s) 7, 199, 267
MnlI CCTC 3 cut(s) 122, 302, 326
MseI TTAA 4 cut(s) 15, 66, 89, 138
MspR9I CCNGG 2 cut(s) 252, 306
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 252, 306
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 1 cut(s) 313
PfoI TCCNGGA 1 cut(s) 304
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 250, 304
PspGI CCWGG 2 cut(s) 250, 304
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 15, 66, 89, 138
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 2 cut(s) 252, 306
SduI GDGCHC 1 cut(s) 316
SetI ASST 4 cut(s) 56, 154, 313, 326
Sse9I AATT 3 cut(s) 7, 199, 267
SspI AATATT 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 250, 304
TaaI ACNGT 1 cut(s) 241
TasI AATT 3 cut(s) 7, 199, 267
Tru1I TTAA 4 cut(s) 15, 66, 89, 138
Tru9I TTAA 4 cut(s) 15, 66, 89, 138
TseI GCWGC 1 cut(s) 284
XapI RAATTY 2 cut(s) 7, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.