MD10G1168400.v1.1

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0001691
Physical Location & Seq
Reverse (-)
26043511 .. 26044583
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1168400.v1.1.491

Sequence Viewer

Length: 465 bp
ATGGATAAAGCAATGAACAGACAGAGGGTTCTGCTGCAGCATTTGAGACCCAATTCTTCTGTTTCTTCTTTCAATTATGAATTTGCTCCTCTTTCTGCTTCAATATGTGCAGCTGGAGATAGTGCTGCCTACCATAGAACAACTGCTTTTGGAGACGATGTAGTGATTGTGGCAGCATATCGGACTGCCATTTGCAAGGCAAAGCGAGGCGGTTTTAAGGACACTCTACCTGATGATTTACTGGCACCTGTTTTAAAGGAAATAATAGAGAGAACAAATTTGAACCCAAGTGAGGTGGGGGATATAGTTGTTGGTACAGTTAGGGCACCTGGCTCACTTAGAGCCACTGAGTGCAGGATGGCAGCGTTTTACGCTGGCTTCCCCGGTAAGTTTTCAACCATATTTGAAGTTGGAGGCCTCTTTTTTGGTATTAATTTTAGCTTAGTGTTATGGTTTGTCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

155

Amino Acids

16.7

Weight (kDa)

8.5

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 54 - 130 3.8e-13 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 244, 325
AciI CCGC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 80, 277
AdeI CACNNNGTG 1 cut(s) 351
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 5 cut(s) 73, 102, 283, 396, 407
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 113, 441
AluI AGCT 2 cut(s) 113, 441
Alw26I GTCTC 2 cut(s) 40, 147
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 6 cut(s) 34, 37, 110, 125, 173, 362
ApoI RAATTY 2 cut(s) 80, 277
AseI ATTAAT 1 cut(s) 432
AsuC2I CCSGG 1 cut(s) 384
BaeGI GKGCMC 1 cut(s) 328
BanI GGYRCC 2 cut(s) 244, 325
BbvI GCAGC 6 cut(s) 21, 49, 112, 122, 185, 374
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 384
BcoDI GTCTC 2 cut(s) 40, 147
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 6 cut(s) 35, 38, 111, 126, 174, 363
BlsI GCNGC 6 cut(s) 36, 39, 112, 127, 175, 364
Bme1390I CCNGG 2 cut(s) 330, 384
BmiI GGNNCC 2 cut(s) 246, 327
BmrFI CCNGG 2 cut(s) 330, 384
BpmI CTGGAG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 328
BseXI GCAGC 6 cut(s) 21, 49, 112, 122, 185, 374
BsgI GTGCAG 2 cut(s) 129, 373
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 2 cut(s) 244, 325
BsiSI CCGG 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 40, 147
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 328
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 246, 327
BspMAI CTGCAG 1 cut(s) 39
BspT107I GGYRCC 2 cut(s) 244, 325
BspTNI GGTCTC 1 cut(s) 40
BsrDI GCAATG 1 cut(s) 18
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 376
BstDEI CTNAG 3 cut(s) 338, 348, 442
BstF5I GGATG 1 cut(s) 363
BstMAI GTCTC 2 cut(s) 40, 147
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 328, 382
BstSFI CTRYAG 1 cut(s) 35
BstSLI GKGCMC 1 cut(s) 328
BstV1I GCAGC 6 cut(s) 21, 49, 112, 122, 185, 374
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 363
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviJI RGCY 6 cut(s) 113, 333, 344, 378, 417, 441
CviKI_1 RGCY 6 cut(s) 113, 333, 344, 378, 417, 441
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 3 cut(s) 338, 348, 442
DraI TTTAAA 1 cut(s) 255
DraIII CACNNNGTG 1 cut(s) 351
Eco147I AGGCCT 1 cut(s) 417
Eco31I GGTCTC 1 cut(s) 40
EcoRII CCWGG 1 cut(s) 328
Esp3I CGTCTC 1 cut(s) 147
FaiI YATR 7 cut(s) 78, 106, 135, 178, 305, 401, 451
Fnu4HI GCNGC 6 cut(s) 35, 38, 111, 126, 174, 363
FokI GGATG 1 cut(s) 370
Fsp4HI GCNGC 6 cut(s) 35, 38, 111, 126, 174, 363
GluI GCNGC 6 cut(s) 35, 38, 111, 126, 174, 363
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 384
HpaII CCGG 1 cut(s) 384
Hpy188I TCNGA 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 37, 110, 195, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 3 cut(s) 338, 348, 442
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 9 cut(s) 99, 227, 243, 261, 315, 340, 342, 360, 397
Lsp1109I GCAGC 6 cut(s) 21, 49, 112, 122, 185, 374
MboII GAAGA 2 cut(s) 48, 57
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 5 cut(s) 52, 73, 80, 277, 433
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 6 cut(s) 18, 99, 200, 286, 407, 428
MseI TTAA 3 cut(s) 216, 254, 432
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 2 cut(s) 330, 384
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 371
NciI CCSGG 1 cut(s) 384
NlaIV GGNNCC 2 cut(s) 246, 327
PceI AGGCCT 1 cut(s) 417
PkrI GCNGC 6 cut(s) 36, 39, 112, 127, 175, 364
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 2 cut(s) 246, 327
PstI CTGCAG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 216, 254, 432
SatI GCNGC 6 cut(s) 35, 38, 111, 126, 174, 363
ScrFI CCNGG 2 cut(s) 330, 384
SduI GDGCHC 1 cut(s) 328
SetI ASST 6 cut(s) 115, 232, 250, 297, 331, 443
SfcI CTRYAG 1 cut(s) 35
Sse9I AATT 5 cut(s) 52, 73, 80, 277, 433
SseBI AGGCCT 1 cut(s) 417
SsiI CCGC 1 cut(s) 210
StuI AGGCCT 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 328, 382
TaaI ACNGT 1 cut(s) 319
TasI AATT 5 cut(s) 52, 73, 80, 277, 433
Tru1I TTAA 3 cut(s) 216, 254, 432
Tru9I TTAA 3 cut(s) 216, 254, 432
TscAI CASTG 1 cut(s) 352
TseI GCWGC 6 cut(s) 34, 37, 110, 125, 173, 362
TspDTI ATGAA 2 cut(s) 29, 93
TspRI CASTG 1 cut(s) 352
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 80, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.