Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001691

Physical Location & Seq

Genomic Coordinates Reverse (-)

31158162 .. 31169383

Gene Structure 11222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG179700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTGAAAAGGACTGCAGCAGTTCAAAATAACTTTTATGATTTTTTTTCTTTTATGAATAGACAAACAGCTTTATTTTCTGCAACCCAGACTAAGAAGGTTGAAGATCTTGCTAACTTTTCCTTCCAGACAACGCCTATGTATATAGATGTGGATGATGGGAGAACTAAGGTAGGAATCCAACTGGTCTTTTGGATTCCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

68

Amino Acids

7.94

Weight (kDa)

8.12

Isoelectric Point (pI)

15.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001691)

Species	Orthologous Gene IDs
malus_domestica	MD06G1073900.v1.1 MD10G1168400.v1.1 MD15G1364500.v1.1
rosa_chinensis	RchiOBHm_Chr6g0267301 RchiOBHm_Chr6g0277641 RchiOBHm_Chr6g0277651 RchiOBHm_Chr6g0286431
rosa_laevigata	RLG00000002514
rosa_roxburghii	Rroxscaffold_1G00000350 Rroxscaffold_1G00036750 Rroxscaffold_2G00129790 Rroxscaffold_7G00199270
rosa_rugosa	Rorug01G0193100 Rorug02G0197300 Rorug02G0197300 Rorug03G0273100 Rorug05G0480700 Rorug06G0006800 Rorug06G0006900 Rorug06G0052300 Rorug07G0068800 Rorug07G0271500
rosa_samantha	Rh1BG169200 Rh1DG199700 Rh2AG202000 Rh2AG202200 Rh2BG215100 Rh2BG543900 Rh2CG206200 Rh2DG209400 Rh3CG296600 Rh3CG296700 Rh3DG292600 Rh4BG187200 Rh5BG466100 Rh5CG224300 Rh5CG487700 Rh6AG179700 Rh6BG138500 Rh6CG136000 Rh6CG169900 Rh6CG227100 Rh6CG255600 Rh6CG296100 Rh6DG122300 Rh6DG162300 Rh6DG217500 Rh6DG287900 Rh7CG193900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	7, 26, 104
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	106
BspMAI	CTGCAG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	93, 168
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	160
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
DdeI	CTNAG	2 cut(s)	93, 168
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
FaiI	YATR	5 cut(s)	39, 56, 140, 144, 146
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	177, 196
Hpy188III	TCNNGA	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	91, 133
HpyCH4V	TGCA	2 cut(s)	17, 83
HpyF3I	CTNAG	2 cut(s)	93, 168
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	101, 140, 170
Lsp1109I	GCAGC	1 cut(s)	29
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	116
MflI	RGATCY	1 cut(s)	106
MmeI	TCCRAC	1 cut(s)	205
NdeII	GATC	1 cut(s)	106
PfeI	GAWTC	2 cut(s)	177, 196
PkrI	GCNGC	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	106
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	1 cut(s)	106
SetI	ASST	3 cut(s)	73, 102, 174
SfcI	CTRYAG	1 cut(s)	15
SgeI	CNNG	4 cut(s)	100, 122, 139, 197
TfiI	GAWTC	2 cut(s)	177, 196
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.