Rh6CG296100

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001691
Physical Location & Seq
Forward (+)
47712881 .. 47718006
5126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG296100.1

Sequence Viewer

Length: 426 bp
ATGTTAAATAGGGCCTACCAAACTGCCATTTACAAAGCAAAGCGAGACCGTTTTAAGGATACTTTAGCTGATGATTTGTTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGTTATTCGCATCAGGACAGTCATCAAGTGTGATGTAGTAATTGTGGATCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTATGTGGATGATGGCATCCGACCAAATGCAAACATGACTGATTTGGTGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

141

Amino Acids

15.34

Weight (kDa)

8.58

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 5 - 75 2.3e-09 Thiolase, N-terminal domain
Thiolase_N PF00108 89 - 141 8.2e-13 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 278
AclWI GGATC 2 cut(s) 263, 276
AcsI RAATTY 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 55, 278
AgsI TTSAA 3 cut(s) 94, 121, 358
AjnI CCWGG 2 cut(s) 166, 405
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 263, 276
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 361
AsuNHI GCTAGC 1 cut(s) 401
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 212
BccI CCATC 4 cut(s) 190, 308, 371, 410
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 168, 407
BciVI GTATCC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 2 cut(s) 168, 407
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 84, 270
BmrFI CCNGG 2 cut(s) 168, 407
BmsI GCATC 2 cut(s) 240, 327
BmtI GCTAGC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 278
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 168, 407
BseGI GGATG 3 cut(s) 201, 316, 318
BseLI CCNNNNNNNGG 2 cut(s) 55, 278
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 55, 278
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 268
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 84, 270
BspMAI CTGCAG 1 cut(s) 394
BspOI GCTAGC 1 cut(s) 405
BspPI GGATC 2 cut(s) 263, 276
BspT107I GGYRCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 283
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 168, 407
Bst4CI ACNGT 3 cut(s) 50, 157, 241
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 363, 403
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 3 cut(s) 201, 316, 318
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstNI CCWGG 2 cut(s) 168, 407
BstNSI RCATGY 1 cut(s) 296
BstSCI CCNGG 2 cut(s) 166, 405
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 3 cut(s) 201, 316, 318
Cac8I GCNNGC 2 cut(s) 363, 403
Cfr13I GGNCC 1 cut(s) 12
CspCI CAANNNNNGTGG 2 cut(s) 288, 323
CviAII CATG 2 cut(s) 293, 337
CviJI RGCY 5 cut(s) 14, 68, 171, 361, 405
CviKI_1 RGCY 5 cut(s) 14, 68, 171, 361, 405
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
DraI TTTAAA 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 166, 405
FaeI CATG 2 cut(s) 296, 340
FaiI YATR 6 cut(s) 104, 143, 210, 294, 306, 338
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 292, 336
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 3 cut(s) 208, 305, 323
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 402
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 2 cut(s) 296, 340
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 323, 376
Hpy188III TCNNGA 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 3 cut(s) 50, 157, 241
HpyCH4V TGCA 4 cut(s) 192, 332, 365, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 296, 340
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 2 cut(s) 240, 327
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 268
MluCI AATT 5 cut(s) 115, 183, 261, 300, 353
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 2 cut(s) 277, 282
MseI TTAA 3 cut(s) 5, 54, 369
MspR9I CCNGG 2 cut(s) 168, 407
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 2 cut(s) 168, 407
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 1 cut(s) 268
NheI GCTAGC 1 cut(s) 401
NlaIII CATG 2 cut(s) 296, 340
NlaIV GGNNCC 2 cut(s) 84, 270
NspI RCATGY 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 166, 405
PspGI CCWGG 2 cut(s) 166, 405
PspN4I GGNNCC 2 cut(s) 84, 270
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 394
PsuI RGATCY 1 cut(s) 268
SaqAI TTAA 3 cut(s) 5, 54, 369
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 168, 407
SetI ASST 3 cut(s) 70, 88, 411
SfaNI GCATC 2 cut(s) 240, 327
SfcI CTRYAG 1 cut(s) 390
SmiI ATTTAAAT 1 cut(s) 370
Sse9I AATT 5 cut(s) 115, 183, 261, 300, 353
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 2 cut(s) 166, 405
SwaI ATTTAAAT 1 cut(s) 370
TaaI ACNGT 3 cut(s) 50, 157, 241
TasI AATT 5 cut(s) 115, 183, 261, 300, 353
Tru1I TTAA 3 cut(s) 5, 54, 369
Tru9I TTAA 3 cut(s) 5, 54, 369
TseI GCWGC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.