Rh5CG487700

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001691
Physical Location & Seq
Reverse (-)
67981523 .. 67983820
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG487700.1

Sequence Viewer

Length: 294 bp
ATGTATCACAATGCAAGCATTGGTACTCTTTTGGAAAACTGTAATGATCTCAAAACAAGTCAAGACCAGACAATGAACCGGGAATCAGTATTGAAGTTCCAAATCTATTCGCATCAGGACAGTCATCAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGGCATTCGGCCAATTGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAATAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

97

Amino Acids

10.75

Weight (kDa)

5.7

Isoelectric Point (pI)

20.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 55 - 97 1.1e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 94, 226
AjnI CCWGG 1 cut(s) 273
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 136
AsuC2I CCSGG 1 cut(s) 80
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 136
BccI CCATC 3 cut(s) 176, 239, 278
BciT130I CCWGG 1 cut(s) 275
BcnI CCSGG 1 cut(s) 80
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 80, 275
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 80, 275
BmsI GCATC 1 cut(s) 121
BmtI GCTAGC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 193
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 193
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 193
BspLI GGNNCC 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 273
BsrI ACTGG 1 cut(s) 151
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 41, 122
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 3 cut(s) 16, 231, 271
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 2 cut(s) 78, 273
BstSFI CTRYAG 1 cut(s) 258
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 16, 231, 271
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 24
CviAII CATG 2 cut(s) 161, 205
CviJI RGCY 3 cut(s) 193, 229, 273
CviKI_1 RGCY 3 cut(s) 193, 229, 273
CviQI GTAC 1 cut(s) 24
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 164, 208
FaiI YATR 3 cut(s) 162, 174, 206
FaqI GGGAC 1 cut(s) 262
FatI CATG 2 cut(s) 160, 204
FokI GGATG 1 cut(s) 191
FspBI CTAG 1 cut(s) 270
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 79
Hin1II CATG 2 cut(s) 164, 208
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 129, 244
Hpy188III TCNNGA 2 cut(s) 62, 116
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 41, 122
HpyCH4V TGCA 4 cut(s) 14, 200, 233, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
Hsp92II CATG 2 cut(s) 164, 208
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 8 cut(s) 80, 92, 101, 132, 243, 246, 260, 287
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 270
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MfeI CAATTG 1 cut(s) 195
MluCI AATT 3 cut(s) 168, 195, 221
MnlI CCTC 2 cut(s) 145, 150
MseI TTAA 1 cut(s) 237
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 2 cut(s) 80, 275
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 80
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 2 cut(s) 164, 208
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 1 cut(s) 164
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 262
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 136
ScrFI CCNGG 2 cut(s) 80, 275
SetI ASST 1 cut(s) 279
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 136
SmiI ATTTAAAT 1 cut(s) 238
Sse9I AATT 3 cut(s) 168, 195, 221
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 78, 273
SwaI ATTTAAAT 1 cut(s) 238
TaaI ACNGT 2 cut(s) 41, 122
TasI AATT 3 cut(s) 168, 195, 221
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TspDTI ATGAA 1 cut(s) 89
Van91I CCANNNNNTGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.