Rh6DG287900

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001691
Physical Location & Seq
Forward (+)
48625592 .. 48638113
12522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG287900.1

Sequence Viewer

Length: 651 bp
ATGTTAAATAGGGCCTACCAAACTGCCATTTACAAAGCAAAGCGAGACCGTTTTAAGGATACTTTAGCTGATGATTTGTTGGCACCTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGGTAAGTCTTTAATTATATGGAGGATGAAGTTAGAGAATTGGGGGAAAGAAGAGGAACTTCAAGTTTGGATGCCCAAGATTGTGGATCCAAAAACTGGAGAGGAGAGGCATGTTACAATTTATGTGGATGATGGCATCCGACCAAATGCAAACATGACTGATTTGGTGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGTATTTCATCACTCAAGTATCAATTGTGTCTGAAACTGCCACTCCTACAAGCACAAAACACCGCCATTACAAGTACTCAAATCTTCCAAGGAGAACATTTCAAGACAGCAAATATTGCATCAAGCAAAGATGAAATTCCATCTTCAGAAATCAGAAATATACATATGAGTGATATGACAAAGAAAAACTGTCTTTGCCACGGTGTTAATGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

216

Amino Acids

24.12

Weight (kDa)

8.97

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 5 - 76 5.1e-09 Thiolase, N-terminal domain
Thiolase_N PF00108 106 - 148 2.8e-06 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 317
AciI CCGC 1 cut(s) 495
AclWI GGATC 2 cut(s) 302, 315
AcsI RAATTY 2 cut(s) 115, 567
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 55, 317
AgsI TTSAA 5 cut(s) 94, 121, 284, 397, 535
AjnI CCWGG 2 cut(s) 166, 220
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 302, 315
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 115, 567
AspS9I GGNCC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 400
BaeI ACNNNNGTAYC 2 cut(s) 434, 467
BamHI GGATCC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 82
BbvI GCAGC 1 cut(s) 212
BccI CCATC 4 cut(s) 190, 347, 410, 580
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 2 cut(s) 168, 222
BciVI GTATCC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 422
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 508
Bme1390I CCNGG 2 cut(s) 168, 222
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 84, 309
BmrFI CCNGG 2 cut(s) 168, 222
BmsI GCATC 3 cut(s) 282, 366, 560
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 520, 631
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 317
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 2 cut(s) 168, 222
BseDI CCNNGG 2 cut(s) 520, 631
BseGI GGATG 5 cut(s) 201, 252, 297, 355, 357
BseLI CCNNNNNNNGG 2 cut(s) 55, 317
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 55, 317
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 1 cut(s) 495
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 84, 309
BspMAI CTGCAG 1 cut(s) 433
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 302, 315
BspT107I GGYRCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 520, 631
BssMI GATC 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 520
Bst2UI CCWGG 2 cut(s) 168, 222
Bst4CI ACNGT 4 cut(s) 50, 157, 623, 635
Bst6I CTCTTC 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 631
BstF5I GGATG 5 cut(s) 201, 252, 297, 355, 357
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 2 cut(s) 168, 222
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 166, 220
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 14
BtgI CCRYGG 1 cut(s) 631
BtsCI GGATG 5 cut(s) 201, 252, 297, 355, 357
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 507
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 332, 376
CviJI RGCY 4 cut(s) 14, 68, 171, 400
CviKI_1 RGCY 4 cut(s) 14, 68, 171, 400
CviQI GTAC 1 cut(s) 507
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 166, 220
EcoT14I CCWWGG 1 cut(s) 520
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 2 cut(s) 335, 379
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 433
FatI CATG 2 cut(s) 331, 375
FauNDI CATATG 1 cut(s) 597
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 5 cut(s) 208, 259, 304, 344, 362
Fsp4HI GCNGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 201
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 14
Hin1II CATG 2 cut(s) 335, 379
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 5 cut(s) 362, 415, 465, 580, 587
Hpy188III TCNNGA 1 cut(s) 535
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 4 cut(s) 50, 157, 623, 635
HpyCH4V TGCA 5 cut(s) 192, 371, 404, 431, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 335, 379
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 9 cut(s) 99, 153, 178, 180, 207, 234, 303, 414, 417
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 3 cut(s) 282, 366, 560
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 3 cut(s) 284, 508, 567
MfeI CAATTG 2 cut(s) 183, 455
MflI RGATCY 1 cut(s) 307
MluCI AATT 8 cut(s) 115, 183, 234, 259, 339, 392, 455, 567
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 4 cut(s) 237, 268, 316, 321
MseI TTAA 5 cut(s) 5, 54, 233, 408, 639
MslI CAYNNNNRTG 1 cut(s) 600
MspR9I CCNGG 2 cut(s) 168, 222
MunI CAATTG 2 cut(s) 183, 455
MvaI CCWGG 2 cut(s) 168, 222
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeI CATATG 1 cut(s) 597
NdeII GATC 1 cut(s) 307
NlaIII CATG 2 cut(s) 335, 379
NlaIV GGNNCC 2 cut(s) 84, 309
NspI RCATGY 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 166, 220
PspGI CCWGG 2 cut(s) 166, 220
PspN4I GGNNCC 2 cut(s) 84, 309
PspPI GGNCC 1 cut(s) 12
PstI CTGCAG 1 cut(s) 433
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 508
RsaNI GTAC 1 cut(s) 507
RseI CAYNNNNRTG 1 cut(s) 600
SaqAI TTAA 5 cut(s) 5, 54, 233, 408, 639
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 307
Sau96I GGNCC 1 cut(s) 12
ScaI AGTACT 1 cut(s) 508
ScrFI CCNGG 2 cut(s) 168, 222
SetI ASST 3 cut(s) 70, 88, 436
SfaNI GCATC 3 cut(s) 282, 366, 560
SfcI CTRYAG 1 cut(s) 429
SmiI ATTTAAAT 1 cut(s) 409
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 8 cut(s) 115, 183, 234, 259, 339, 392, 455, 567
SsiI CCGC 1 cut(s) 495
SspI AATATT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 166, 220
StyI CCWWGG 1 cut(s) 520
SwaI ATTTAAAT 1 cut(s) 409
TaaI ACNGT 4 cut(s) 50, 157, 623, 635
TasI AATT 8 cut(s) 115, 183, 234, 259, 339, 392, 455, 567
TatI WGTACW 1 cut(s) 506
Tru1I TTAA 5 cut(s) 5, 54, 233, 408, 639
Tru9I TTAA 5 cut(s) 5, 54, 233, 408, 639
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 263, 429, 579
Van91I CCANNNNNTGG 1 cut(s) 317
XapI RAATTY 2 cut(s) 115, 567
XceI RCATGY 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.