RchiOBHm_Chr6g0277641

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001691
Physical Location & Seq
Forward (+)
40157428 .. 40157977
550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24907

Sequence Viewer

Length: 345 bp
ATGAGAAATTTGTTTAATATTTTGCAATCTATATATTTTGATAATGTTTATACCTTCCCTGTGCTTAATATTGCCTTGAAAATCATGTTAAACAGGGCCTACCGAACTGCCATTTACAAAGCAAAGCGAGGCGGTTTTAAGGATACTTTAGTTGATGATTTGCTAGCACCTGTTTTGAAGGTAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATGGCAGCATTTTATGTTGGTTTTCCTGATATAGTTCCCATCAGAACTGTCAACATGCAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

114

Amino Acids

12.8

Weight (kDa)

9.3

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 32 - 114 4e-14 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AcsI RAATTY 2 cut(s) 7, 199
AgsI TTSAA 3 cut(s) 79, 178, 205
AjnI CCWGG 1 cut(s) 250
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 2 cut(s) 7, 199
AspS9I GGNCC 1 cut(s) 96
AsuNHI GCTAGC 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 135, 168
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 274, 326
BcgI CGANNNNNNTGC 2 cut(s) 226, 260
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 136
BfaI CTAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 252
BmtI GCTAGC 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 1 cut(s) 98
BsnI GGCC 1 cut(s) 98
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 98
BspOI GCTAGC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 241, 328
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 285
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 296
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 96
CviAII CATG 2 cut(s) 85, 334
CviJI RGCY 2 cut(s) 98, 255
CviKI_1 RGCY 2 cut(s) 98, 255
DdeI CTNAG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 2 cut(s) 88, 337
FaiI YATR 9 cut(s) 32, 34, 51, 86, 188, 227, 294, 311, 335
FatI CATG 2 cut(s) 84, 333
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 98
Hin1II CATG 2 cut(s) 88, 337
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 64, 172
HpyCH4III ACNGT 2 cut(s) 241, 328
HpyCH4V TGCA 3 cut(s) 25, 276, 337
HpyF3I CTNAG 1 cut(s) 260
Hsp92II CATG 2 cut(s) 88, 337
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 7 cut(s) 72, 79, 183, 237, 262, 264, 318
Lsp1109I GCAGC 1 cut(s) 296
MaeI CTAG 1 cut(s) 164
MfeI CAATTG 1 cut(s) 267
MluCI AATT 3 cut(s) 7, 199, 267
MnlI CCTC 1 cut(s) 122
MseI TTAA 4 cut(s) 15, 66, 89, 138
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 252
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 2 cut(s) 88, 337
NspI RCATGY 1 cut(s) 337
PkrI GCNGC 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspPI GGNCC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 15, 66, 89, 138
SatI GCNGC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 252
SetI ASST 3 cut(s) 56, 172, 183
Sse9I AATT 3 cut(s) 7, 199, 267
SsiI CCGC 1 cut(s) 132
SspI AATATT 2 cut(s) 19, 70
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 2 cut(s) 241, 328
TasI AATT 3 cut(s) 7, 199, 267
Tru1I TTAA 4 cut(s) 15, 66, 89, 138
Tru9I TTAA 4 cut(s) 15, 66, 89, 138
TseI GCWGC 1 cut(s) 284
XapI RAATTY 2 cut(s) 7, 199
XceI RCATGY 1 cut(s) 337
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.