Rh6CG136000

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001691
Physical Location & Seq
Forward (+)
17249136 .. 17254033
4898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG136000.1

Sequence Viewer

Length: 237 bp
ATGGATATAGCTATATTGGGGTTTTGTCTTGGGGAAGACAATGAACTGGGAATCAATATTGAAGTTCCAAAGATTGTGGACCCAAAAACTGGAGAGGAGAGGCATGTTAGAATTTATGTGGATGATGACATCCGGCCAAATGCAAACATGACTGATTTGGCGAAATTGAAGCCTGCATTTAAATCAGATGGGACAACAACTGCAGGAAATGCTAGCCAGGTAAGTGATGGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

78

Amino Acids

8.4

Weight (kDa)

4.47

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 29 - 77 1e-12 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 62, 169
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AoxI GGCC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 79
AsuNHI GCTAGC 1 cut(s) 212
AvaII GGWCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 42
BccI CCATC 2 cut(s) 182, 221
BciT130I CCWGG 1 cut(s) 218
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 1 cut(s) 56
BmtI GCTAGC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 51, 94
BseBI CCWGG 1 cut(s) 218
BseGI GGATG 2 cut(s) 127, 129
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 51, 94
BseRI GAGGAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 136
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 136
BspANI GGCC 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 81
BspMAI CTGCAG 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 216
BsrI ACTGG 2 cut(s) 51, 94
Bst2UI CCWGG 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 174, 214
BstF5I GGATG 2 cut(s) 127, 129
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 127, 129
Cac8I GCNNGC 2 cut(s) 174, 214
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 231
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 2 cut(s) 104, 148
CviJI RGCY 4 cut(s) 11, 136, 172, 216
CviKI_1 RGCY 4 cut(s) 11, 136, 172, 216
CviQI GTAC 1 cut(s) 231
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 107, 151
FaiI YATR 5 cut(s) 8, 14, 105, 117, 149
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 103, 147
FokI GGATG 2 cut(s) 116, 134
FspBI CTAG 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 133
Hin1II CATG 2 cut(s) 107, 151
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4V TGCA 3 cut(s) 143, 176, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 2 cut(s) 107, 151
LpnPI CCDG 7 cut(s) 32, 75, 146, 186, 189, 203, 230
MaeI CTAG 1 cut(s) 213
MboII GAAGA 1 cut(s) 47
MluCI AATT 2 cut(s) 111, 164
MnlI CCTC 2 cut(s) 88, 93
MseI TTAA 1 cut(s) 180
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 218
MvaI CCWGG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 209
NheI GCTAGC 1 cut(s) 212
NlaIII CATG 2 cut(s) 107, 151
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 107
PfeI GAWTC 1 cut(s) 51
PflMI CCANNNNNTGG 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 205
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 79
ScrFI CCNGG 1 cut(s) 218
SetI ASST 2 cut(s) 13, 222
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 79
SmiI ATTTAAAT 1 cut(s) 181
Sse9I AATT 2 cut(s) 111, 164
SspI AATATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 216
SwaI ATTTAAAT 1 cut(s) 181
TasI AATT 2 cut(s) 111, 164
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 111
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.