Rh2AG202000

Belongs to the thiolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001691
Physical Location & Seq
Forward (+)
20398053 .. 20408836
10784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG202000.1

Sequence Viewer

Length: 255 bp
ATGATGAATAGGGCCTACCAAACTACCATTTACAAAGCAAAGCGAGGAGGTTTTAAGGATACTTTAGCTGATGATTTGCTGGCACTTGTTTTGAAGGCAGTTATAGAGAGAACAAATTTGAACCCAAGTGAAGTAGGGGATATAGTGGTTGGCACAGTTCTCGCTCCTGGCTCACTTAGAGCAATTGAGTGCAGGATTCGAGGATGGCAGCATTTTATGTTGGTTTTCCTGAAAGGAGGTGCCCTCAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003988 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0006082 GO:0006629 GO:0006631 GO:0006635 GO:0006950 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009062 GO:0009507 GO:0009514 GO:0009536 GO:0009611 GO:0009657 GO:0009694 GO:0009695 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010111 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016042 GO:0016043 GO:0016053 GO:0016054 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019395 GO:0019752 GO:0023051 GO:0023056 GO:0030258 GO:0031090 GO:0031974 GO:0031981 GO:0032787 GO:0034440 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046395 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0055114 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072330 GO:0098588 GO:0098805 GO:1901419 GO:1901421 GO:1901575 GO:1901576 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko00071 ko00280 ko00592 ko01040 ko01100 ko01110 ko01130 ko01212 ko03320 ko04146 map00071 map00280 map00592 map01040 map01100 map01110 map01130 map01212 map03320 map04146
Pfam Domains
Protein Families
Thiolase_C Thiolase_N

Protein Analysis

84

Amino Acids

9.25

Weight (kDa)

9.65

Isoelectric Point (pI)

23.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thiolase_N PF00108 5 - 58 1.1e-08 Thiolase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AcsI RAATTY 1 cut(s) 115
AgsI TTSAA 2 cut(s) 94, 121
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 198
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciT130I CCWGG 1 cut(s) 168
BciVI GTATCC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 168
BplI GAGNNNNNCTC 1 cut(s) 228
BseBI CCWGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 209
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 211
BshFI GGCC 1 cut(s) 14
BshNI GGYRCC 1 cut(s) 239
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 244
BspANI GGCC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 241
BspT107I GGYRCC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 209
BstNI CCWGG 1 cut(s) 168
BstSCI CCNGG 1 cut(s) 166
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 220
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 12
CviJI RGCY 3 cut(s) 14, 68, 171
CviKI_1 RGCY 3 cut(s) 14, 68, 171
DdeI CTNAG 1 cut(s) 176
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 166
FaiI YATR 3 cut(s) 104, 143, 218
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 209
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 14
HinfI GANTC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 176
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 5 cut(s) 65, 153, 178, 180, 242
Lsp1109I GCAGC 1 cut(s) 220
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 115, 183
MnlI CCTC 5 cut(s) 38, 41, 194, 230, 254
MseI TTAA 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 168
NlaIV GGNNCC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 52, 70, 241, 254
Sse9I AATT 2 cut(s) 115, 183
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 199
TasI AATT 2 cut(s) 115, 183
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 20
XapI RAATTY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.