Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Reverse (-)

14038765 .. 14041083

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGTTTGATGGGACATGCTGGGAAGCGAAGAGCCTTTGGCAGAGTCAAAGTCGCAGCTGAGGGCTCAACTTCAGTTGACGCTTTGGCTGATGACTATTACTCTGTCTTGGGTTTGCTTCCAGATGCAACACCAGCACAGATCAAGAAAGCCTATTACAATTGTATGAAGGCTTGTCATCCTGACTTGAGTGCTGATAATCCGGAGACAACAAATTTCTGTATGTTCATCAATGAGGTCTATGAGGTGGGTTTCCGTACGGAGCTTAATGCTTTGAGCTTGAAGCGAGAGAGATGGGTGCCCAGATCAGATTTGGATCCCATAAAAATGATTAGAGAAAAAAATAATAATTCATATATGAATGGACGAAAATACCCCTGTAAATTTGCTAGCTGGCAAACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

135

Amino Acids

15.32

Weight (kDa)

8.9

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	32 - 83	4e-13	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	2 cut(s)	311, 324
AcsI	RAATTY	2 cut(s)	214, 383
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	4 cut(s)	59, 265, 279, 393
AluI	AGCT	4 cut(s)	59, 265, 279, 393
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	2 cut(s)	311, 324
Aor13HI	TCCGGA	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	214, 383
AsuNHI	GCTAGC	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	68
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	4, 288
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	300, 318
BmsI	GCATC	1 cut(s)	115
BmtI	GCTAGC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	315
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	203
BsiWI	CGTACG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	68, 303
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	141, 305, 316
BspCNI	CTCAG	1 cut(s)	52
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	300, 318
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	311, 324
BspQI	GCTCTTC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	298
BssMI	GATC	3 cut(s)	141, 305, 316
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	391, 395
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	144, 308, 319
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	141, 305, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	178
Cac8I	GCNNGC	2 cut(s)	391, 395
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	9 cut(s)	35, 59, 66, 89, 152, 173, 265, 279, 393
CviKI_1	RGCY	9 cut(s)	35, 59, 66, 89, 152, 173, 265, 279, 393
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	3 cut(s)	143, 307, 318
DpnII	GATC	3 cut(s)	141, 305, 316
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	1 cut(s)	20
FaiI	YATR	8 cut(s)	18, 167, 224, 243, 323, 355, 357, 359
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	24
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	4 cut(s)	122, 145, 182, 203
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	141, 305, 316
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	8 cut(s)	6, 135, 147, 195, 216, 316, 379, 391
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	390
MalI	GATC	3 cut(s)	143, 307, 318
MboI	GATC	3 cut(s)	141, 305, 316
MboII	GAAGA	1 cut(s)	42
MfeI	CAATTG	1 cut(s)	160
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	2 cut(s)	68, 303
MluCI	AATT	4 cut(s)	160, 214, 349, 383
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	55, 229, 238
MroI	TCCGGA	1 cut(s)	202
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	141, 305, 316
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	1 cut(s)	20
NlaIV	GGNNCC	2 cut(s)	300, 318
NspI	RCATGY	1 cut(s)	20
PciSI	GCTCTTC	1 cut(s)	25
Pfl23II	CGTACG	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	20
PspLI	CGTACG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	300, 318
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	3 cut(s)	141, 305, 316
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	68, 303
SetI	ASST	6 cut(s)	61, 240, 249, 267, 281, 395
SfaNI	GCATC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	160, 214, 349, 383
SspMI	CTAG	1 cut(s)	390
TasI	AATT	4 cut(s)	160, 214, 349, 383
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	4 cut(s)	182, 217, 342, 374
TspGWI	ACGGA	2 cut(s)	245, 275
XapI	RAATTY	2 cut(s)	214, 383
XceI	RCATGY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.