Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Forward (+)

63864523 .. 63865646

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTGCCCATCGGAGCGCTGAAGGGCCATTCTACACCTCAGAATGTTGGCCAAGATTTTGCACCATTGGCAAAGAATGATGGAAGCAGCAGCTTTCAAATGAAGACATTTGCAAATGCCATAGCAGGAACTAGAATTCTTTTCCAAGTTAGGAAGGTGTTGTCTCAGTTTATGAAATTGCTGAAGGAGGAGCTGGAGATTGGTTTAGAGGTGAGTTCCAGCGCTCCAGACCATAAACTTTTAAATTTTACAAGCACAATAAAGATGATCATGATCTCTTGTTGTCATATGCTTCCTTTTTTTCTTTTTCTGAGAAGAGCTGCTGATATCATACCCTGGGAGTTGTTTGATTTTCAATGTTCTCAACCATATTTGTTGGTGCTGCAGTTGCTTTTACTTTTCATAATTGTTGTCAGTATTCGTTTTTCTGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

145

Amino Acids

16.29

Weight (kDa)

8.91

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	135, 244
AcuI	CTGAAG	2 cut(s)	41, 203
AfeI	AGCGCT	2 cut(s)	18, 223
AgsI	TTSAA	2 cut(s)	98, 356
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	93, 193, 320
AluI	AGCT	3 cut(s)	93, 193, 320
Alw26I	GTCTC	1 cut(s)	168
Aor51HI	AGCGCT	2 cut(s)	18, 223
AoxI	GGCC	2 cut(s)	25, 49
ApeKI	GCWGC	4 cut(s)	87, 90, 320, 382
ApoI	RAATTY	2 cut(s)	135, 244
AspLEI	GCGC	2 cut(s)	19, 224
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	4 cut(s)	99, 102, 307, 369
BccI	CCATC	2 cut(s)	17, 74
BciT130I	CCWGG	1 cut(s)	337
BclI	TGATCA	1 cut(s)	267
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	2 cut(s)	20, 225
BisI	GCNGC	4 cut(s)	88, 91, 321, 383
BlsI	GCNGC	4 cut(s)	89, 92, 322, 384
Bme1390I	CCNGG	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	210, 215
BsaBI	GATNNNNATC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	335, 336
Bse8I	GATNNNNATC	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	2 cut(s)	335, 336
BseJI	GATNNNNATC	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	53, 179, 302
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	99, 102, 307, 369
BshFI	GGCC	2 cut(s)	27, 51
BshNI	GGYRCC	1 cut(s)	4
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	27, 51
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	267, 273
BspANI	GGCC	2 cut(s)	27, 51
BspCNI	CTCAG	3 cut(s)	52, 178, 303
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	335, 336
BssMI	GATC	2 cut(s)	267, 273
Bst2UI	CCWGG	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	39, 165, 311
BstH2I	RGCGCY	2 cut(s)	20, 225
BstHHI	GCGC	2 cut(s)	19, 224
BstKTI	GATC	2 cut(s)	270, 276
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	2 cut(s)	267, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 388
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	99, 102, 307, 369
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	27, 51
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	2 cut(s)	19, 224
Cfr13I	GGNCC	1 cut(s)	25
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	5 cut(s)	27, 51, 93, 193, 320
CviKI_1	RGCY	5 cut(s)	27, 51, 93, 193, 320
DdeI	CTNAG	3 cut(s)	39, 165, 311
DpnI	GATC	2 cut(s)	269, 275
DpnII	GATC	2 cut(s)	267, 273
DraI	TTTAAA	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	328
Eco47III	AGCGCT	2 cut(s)	18, 223
Eco57I	CTGAAG	2 cut(s)	41, 203
EcoRI	GAATTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	328
FaeI	CATG	1 cut(s)	274
FaiI	YATR	9 cut(s)	122, 173, 234, 272, 288, 290, 332, 370, 404
FatI	CATG	1 cut(s)	270
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	88, 91, 321, 383
Fsp4HI	GCNGC	4 cut(s)	88, 91, 321, 383
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	2 cut(s)	18, 223
GluI	GCNGC	4 cut(s)	88, 91, 321, 383
GsuI	CTGGAG	2 cut(s)	210, 215
HaeII	RGCGCY	2 cut(s)	20, 225
HaeIII	GGCC	2 cut(s)	27, 51
HhaI	GCGC	2 cut(s)	19, 224
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	2 cut(s)	17, 222
HinP1I	GCGC	2 cut(s)	17, 222
HinfI	GANTC	1 cut(s)	432
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	14, 42, 312, 437
Hpy188III	TCNNGA	3 cut(s)	227, 271, 429
HpyAV	CCTTC	3 cut(s)	16, 148, 178
HpyCH4V	TGCA	3 cut(s)	62, 113, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 388
HpyF3I	CTNAG	3 cut(s)	39, 165, 311
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	2 cut(s)	17, 222
Ksp22I	TGATCA	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	267, 273
LguI	GCTCTTC	1 cut(s)	310
LmnI	GCTCC	3 cut(s)	14, 190, 229
LpnPI	CCDG	7 cut(s)	111, 179, 232, 240, 322, 349, 414
Lsp1109I	GCAGC	4 cut(s)	99, 102, 307, 369
MaeI	CTAG	1 cut(s)	132
MalI	GATC	2 cut(s)	269, 275
MboI	GATC	2 cut(s)	267, 273
MboII	GAAGA	2 cut(s)	115, 327
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	4 cut(s)	135, 176, 244, 405
MluNI	TGGCCA	1 cut(s)	51
MnlI	CCTC	3 cut(s)	48, 181, 202
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	1 cut(s)	242
Msp20I	TGGCCA	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	68, 388
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	2 cut(s)	267, 273
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	4 cut(s)	89, 92, 322, 384
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	4 cut(s)	88, 91, 321, 383
Sau3AI	GATC	2 cut(s)	267, 273
Sau96I	GGNCC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	40, 95, 159, 195, 213, 322
SfcI	CTRYAG	1 cut(s)	383
Sse9I	AATT	4 cut(s)	135, 176, 244, 405
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	335
TasI	AATT	4 cut(s)	135, 176, 244, 405
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseI	GCWGC	4 cut(s)	87, 90, 320, 382
TspDTI	ATGAA	3 cut(s)	116, 188, 391
XapI	RAATTY	2 cut(s)	135, 244
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.