Rroxscaffold_1G00038440

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
55917313 .. 55918152
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038440.1

Sequence Viewer

Length: 165 bp
ATGCCTGTTTTATACCATTGCAGTTTTTCTGAACTATTTCTTGCTCCAACAAAACAAATAATAGGAGCTGATGGACTGAAGGCTGTAGAAAAAAAGACAGTCAAAGAACTCAACCTACTAGATCCAGAAACAGACAAGGAATCCATTCACGTGCAATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.03

Weight (kDa)

5.5

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 98
AcvI CACGTG 1 cut(s) 151
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
AlwI GGATC 1 cut(s) 116
Asp700I GAANNNNTTC 2 cut(s) 36, 144
BbrPI CACGTG 1 cut(s) 151
BccI CCATC 1 cut(s) 65
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 151
Bse3DI GCAATG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 16
Bsp143I GATC 1 cut(s) 121
BspHI TCATGA 1 cut(s) 161
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 16
BssMI GATC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 151
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
CciI TCATGA 1 cut(s) 161
CviAII CATG 1 cut(s) 162
CviJI RGCY 2 cut(s) 68, 83
CviKI_1 RGCY 2 cut(s) 68, 83
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 98
Eco72I CACGTG 1 cut(s) 151
FaeI CATG 1 cut(s) 165
FaiI YATR 2 cut(s) 13, 163
FatI CATG 1 cut(s) 161
FspBI CTAG 1 cut(s) 119
Hin1II CATG 1 cut(s) 165
HinfI GANTC 1 cut(s) 140
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 125, 162
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 21, 154
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 165
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 49, 65
LpnPI CCDG 2 cut(s) 18, 138
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 71
MroXI GAANNNNTTC 2 cut(s) 36, 144
MslI CAYNNNNRTG 1 cut(s) 149
MunI CAATTG 1 cut(s) 155
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 165
PagI TCATGA 1 cut(s) 161
PdmI GAANNNNTTC 2 cut(s) 36, 144
PfeI GAWTC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
Ppu21I YACGTR 1 cut(s) 151
PspCI CACGTG 1 cut(s) 151
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PsuI RGATCY 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 149
Sau3AI GATC 1 cut(s) 121
SetI ASST 3 cut(s) 70, 117, 153
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 6 cut(s) 17, 53, 131, 137, 148, 161
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 1 cut(s) 155
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 100
TaiI ACGT 1 cut(s) 153
TasI AATT 1 cut(s) 155
TfiI GAWTC 1 cut(s) 140
XmnI GAANNNNTTC 2 cut(s) 36, 144
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.