DNA recombination
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 217 |
| AfaI | GTAC | 2 cut(s) | 62, 97 |
| AfeI | AGCGCT | 1 cut(s) | 290 |
| AflIII | ACRYGT | 1 cut(s) | 197 |
| AgsI | TTSAA | 4 cut(s) | 58, 70, 154, 256 |
| AjiI | CACGTC | 1 cut(s) | 200 |
| AjnI | CCWGG | 1 cut(s) | 115 |
| Aor51HI | AGCGCT | 1 cut(s) | 290 |
| AoxI | GGCC | 1 cut(s) | 7 |
| AspLEI | GCGC | 1 cut(s) | 291 |
| BccI | CCATC | 1 cut(s) | 124 |
| BciT130I | CCWGG | 1 cut(s) | 117 |
| BfmI | CTRYAG | 1 cut(s) | 260 |
| BfoI | RGCGCY | 1 cut(s) | 292 |
| BfuAI | ACCTGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 117 |
| BmgBI | CACGTC | 1 cut(s) | 200 |
| BmrFI | CCNGG | 1 cut(s) | 117 |
| BmrI | ACTGGG | 1 cut(s) | 96 |
| BmsI | GCATC | 1 cut(s) | 200 |
| BmuI | ACTGGG | 1 cut(s) | 96 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| BseBI | CCWGG | 1 cut(s) | 117 |
| BseGI | GGATG | 3 cut(s) | 30, 96, 139 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BshFI | GGCC | 1 cut(s) | 9 |
| BsmI | GAATGC | 1 cut(s) | 120 |
| BsnI | GGCC | 1 cut(s) | 9 |
| Bsp143I | GATC | 2 cut(s) | 217, 226 |
| BspANI | GGCC | 1 cut(s) | 9 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspHI | TCATGA | 1 cut(s) | 180 |
| BspMAI | CTGCAG | 1 cut(s) | 264 |
| BspMI | ACCTGC | 1 cut(s) | 217 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssMI | GATC | 2 cut(s) | 217, 226 |
| Bst2UI | CCWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 2 cut(s) | 76, 244 |
| BstC8I | GCNNGC | 1 cut(s) | 11 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstF5I | GGATG | 3 cut(s) | 30, 96, 139 |
| BstH2I | RGCGCY | 1 cut(s) | 292 |
| BstHHI | GCGC | 1 cut(s) | 291 |
| BstKTI | GATC | 2 cut(s) | 220, 229 |
| BstMBI | GATC | 2 cut(s) | 217, 226 |
| BstNI | CCWGG | 1 cut(s) | 117 |
| BstNSI | RCATGY | 1 cut(s) | 102 |
| BstSCI | CCNGG | 1 cut(s) | 115 |
| BstSFI | CTRYAG | 1 cut(s) | 260 |
| BsuRI | GGCC | 1 cut(s) | 9 |
| BtrI | CACGTC | 1 cut(s) | 200 |
| BtsCI | GGATG | 3 cut(s) | 30, 96, 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 84 |
| BveI | ACCTGC | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 1 cut(s) | 11 |
| CciI | TCATGA | 1 cut(s) | 180 |
| CfoI | GCGC | 1 cut(s) | 291 |
| Csp6I | GTAC | 2 cut(s) | 61, 96 |
| CviAII | CATG | 3 cut(s) | 99, 167, 181 |
| CviJI | RGCY | 1 cut(s) | 9 |
| CviKI_1 | RGCY | 1 cut(s) | 9 |
| CviQI | GTAC | 2 cut(s) | 61, 96 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 2 cut(s) | 219, 228 |
| DpnII | GATC | 2 cut(s) | 217, 226 |
| Eco147I | AGGCCT | 1 cut(s) | 9 |
| Eco47III | AGCGCT | 1 cut(s) | 290 |
| EcoRII | CCWGG | 1 cut(s) | 115 |
| EcoT22I | ATGCAT | 1 cut(s) | 104 |
| FaeI | CATG | 3 cut(s) | 102, 170, 184 |
| FaiI | YATR | 6 cut(s) | 28, 80, 100, 141, 168, 182 |
| FatI | CATG | 3 cut(s) | 98, 166, 180 |
| FokI | GGATG | 3 cut(s) | 17, 103, 146 |
| GlaI | GCGC | 1 cut(s) | 290 |
| HaeII | RGCGCY | 1 cut(s) | 292 |
| HaeIII | GGCC | 1 cut(s) | 9 |
| HhaI | GCGC | 1 cut(s) | 291 |
| Hin1II | CATG | 3 cut(s) | 102, 170, 184 |
| Hin6I | GCGC | 1 cut(s) | 289 |
| HinP1I | GCGC | 1 cut(s) | 289 |
| HinfI | GANTC | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 4 cut(s) | 125, 181, 215, 230 |
| HpyCH4III | ACNGT | 2 cut(s) | 76, 244 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 4 cut(s) | 13, 41, 102, 262 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 3 cut(s) | 102, 170, 184 |
| HspAI | GCGC | 1 cut(s) | 289 |
| Kzo9I | GATC | 2 cut(s) | 217, 226 |
| LmnI | GCTCC | 3 cut(s) | 175, 217, 286 |
| LpnPI | CCDG | 7 cut(s) | 23, 72, 102, 129, 138, 222, 228 |
| LweI | GCATC | 1 cut(s) | 200 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MalI | GATC | 2 cut(s) | 219, 228 |
| MboI | GATC | 2 cut(s) | 217, 226 |
| MluCI | AATT | 1 cut(s) | 237 |
| MnlI | CCTC | 1 cut(s) | 274 |
| Mph1103I | ATGCAT | 1 cut(s) | 104 |
| MslI | CAYNNNNRTG | 1 cut(s) | 89 |
| MspR9I | CCNGG | 1 cut(s) | 117 |
| Mva1269I | GAATGC | 1 cut(s) | 120 |
| MvaI | CCWGG | 1 cut(s) | 117 |
| NdeII | GATC | 2 cut(s) | 217, 226 |
| NlaIII | CATG | 3 cut(s) | 102, 170, 184 |
| NsiI | ATGCAT | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 102 |
| PagI | TCATGA | 1 cut(s) | 180 |
| PceI | AGGCCT | 1 cut(s) | 9 |
| PctI | GAATGC | 1 cut(s) | 120 |
| PfeI | GAWTC | 1 cut(s) | 256 |
| Psp6I | CCWGG | 1 cut(s) | 115 |
| PspGI | CCWGG | 1 cut(s) | 115 |
| PstI | CTGCAG | 1 cut(s) | 264 |
| RsaI | GTAC | 2 cut(s) | 62, 97 |
| RsaNI | GTAC | 2 cut(s) | 61, 96 |
| RseI | CAYNNNNRTG | 1 cut(s) | 89 |
| Sau3AI | GATC | 2 cut(s) | 217, 226 |
| ScrFI | CCNGG | 1 cut(s) | 117 |
| SetI | ASST | 4 cut(s) | 163, 202, 211, 285 |
| SfaNI | GCATC | 1 cut(s) | 200 |
| SfcI | CTRYAG | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 89 |
| Sse9I | AATT | 1 cut(s) | 237 |
| SseBI | AGGCCT | 1 cut(s) | 9 |
| StuI | AGGCCT | 1 cut(s) | 9 |
| StyD4I | CCNGG | 1 cut(s) | 115 |
| TaaI | ACNGT | 2 cut(s) | 76, 244 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TasI | AATT | 1 cut(s) | 237 |
| TatI | WGTACW | 2 cut(s) | 60, 95 |
| TfiI | GAWTC | 1 cut(s) | 256 |
| TscAI | CASTG | 1 cut(s) | 91 |
| TspRI | CASTG | 1 cut(s) | 91 |
| XceI | RCATGY | 1 cut(s) | 102 |
| Zsp2I | ATGCAT | 1 cut(s) | 104 |