DNA recombination
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 493 |
| AccI | GTMKAC | 1 cut(s) | 13 |
| AdeI | CACNNNGTG | 1 cut(s) | 70 |
| AfaI | GTAC | 4 cut(s) | 53, 128, 256, 373 |
| AfeI | AGCGCT | 1 cut(s) | 566 |
| AflIII | ACRYGT | 2 cut(s) | 281, 473 |
| AgsI | TTSAA | 5 cut(s) | 43, 145, 320, 430, 532 |
| AjiI | CACGTC | 1 cut(s) | 476 |
| AjnI | CCWGG | 1 cut(s) | 391 |
| AluBI | AGCT | 1 cut(s) | 197 |
| AluI | AGCT | 1 cut(s) | 197 |
| Alw21I | GWGCWC | 1 cut(s) | 66 |
| Alw26I | GTCTC | 1 cut(s) | 273 |
| Aor51HI | AGCGCT | 1 cut(s) | 566 |
| AspLEI | GCGC | 1 cut(s) | 567 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 35, 68 |
| Bbv12I | GWGCWC | 1 cut(s) | 66 |
| BccI | CCATC | 2 cut(s) | 71, 400 |
| BciT130I | CCWGG | 1 cut(s) | 393 |
| BcoDI | GTCTC | 1 cut(s) | 273 |
| BfmI | CTRYAG | 1 cut(s) | 536 |
| BfoI | RGCGCY | 1 cut(s) | 568 |
| BfuAI | ACCTGC | 1 cut(s) | 493 |
| Bme1390I | CCNGG | 1 cut(s) | 393 |
| BmgBI | CACGTC | 1 cut(s) | 476 |
| BmrFI | CCNGG | 1 cut(s) | 393 |
| BmrI | ACTGGG | 2 cut(s) | 206, 372 |
| BmsI | GCATC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 2 cut(s) | 206, 372 |
| BsaJI | CCNNGG | 1 cut(s) | 57 |
| Bse1I | ACTGG | 3 cut(s) | 51, 212, 367 |
| Bse3DI | GCAATG | 1 cut(s) | 306 |
| BseBI | CCWGG | 1 cut(s) | 393 |
| BseDI | CCNNGG | 1 cut(s) | 57 |
| BseGI | GGATG | 2 cut(s) | 372, 415 |
| BseMI | GCAATG | 1 cut(s) | 306 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseNI | ACTGG | 3 cut(s) | 51, 212, 367 |
| BsgI | GTGCAG | 1 cut(s) | 88 |
| BsiHKAI | GWGCWC | 1 cut(s) | 66 |
| BsmAI | GTCTC | 1 cut(s) | 273 |
| BsmI | GAATGC | 2 cut(s) | 87, 396 |
| Bsp1286I | GDGCHC | 1 cut(s) | 66 |
| Bsp1407I | TGTACA | 1 cut(s) | 126 |
| Bsp143I | GATC | 3 cut(s) | 219, 493, 502 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 456 |
| BspMAI | CTGCAG | 1 cut(s) | 540 |
| BspMI | ACCTGC | 1 cut(s) | 493 |
| BsrDI | GCAATG | 1 cut(s) | 306 |
| BsrGI | TGTACA | 1 cut(s) | 126 |
| BsrI | ACTGG | 3 cut(s) | 51, 212, 367 |
| BssECI | CCNNGG | 1 cut(s) | 57 |
| BssMI | GATC | 3 cut(s) | 219, 493, 502 |
| BssT1I | CCWWGG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 1 cut(s) | 393 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 352, 520 |
| BstAUI | TGTACA | 1 cut(s) | 126 |
| BstDEI | CTNAG | 1 cut(s) | 402 |
| BstF5I | GGATG | 2 cut(s) | 372, 415 |
| BstH2I | RGCGCY | 1 cut(s) | 568 |
| BstHHI | GCGC | 1 cut(s) | 567 |
| BstKTI | GATC | 3 cut(s) | 222, 496, 505 |
| BstMAI | GTCTC | 1 cut(s) | 273 |
| BstMBI | GATC | 3 cut(s) | 219, 493, 502 |
| BstNI | CCWGG | 1 cut(s) | 393 |
| BstNSI | RCATGY | 2 cut(s) | 285, 378 |
| BstSCI | CCNGG | 1 cut(s) | 391 |
| BstSFI | CTRYAG | 1 cut(s) | 536 |
| BtrI | CACGTC | 1 cut(s) | 476 |
| BtsCI | GGATG | 2 cut(s) | 372, 415 |
| BtsIMutI | CAGTG | 2 cut(s) | 66, 360 |
| BveI | ACCTGC | 1 cut(s) | 493 |
| CciI | TCATGA | 1 cut(s) | 456 |
| CfoI | GCGC | 1 cut(s) | 567 |
| Csp6I | GTAC | 4 cut(s) | 52, 127, 255, 372 |
| CviAII | CATG | 6 cut(s) | 92, 190, 282, 375, 443, 457 |
| CviJI | RGCY | 1 cut(s) | 197 |
| CviKI_1 | RGCY | 1 cut(s) | 197 |
| CviQI | GTAC | 4 cut(s) | 52, 127, 255, 372 |
| DdeI | CTNAG | 1 cut(s) | 402 |
| DpnI | GATC | 3 cut(s) | 221, 495, 504 |
| DpnII | GATC | 3 cut(s) | 219, 493, 502 |
| DraIII | CACNNNGTG | 1 cut(s) | 70 |
| Eco130I | CCWWGG | 1 cut(s) | 57 |
| Eco47III | AGCGCT | 1 cut(s) | 566 |
| EcoRII | CCWGG | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 1 cut(s) | 57 |
| EcoT22I | ATGCAT | 1 cut(s) | 380 |
| ErhI | CCWWGG | 1 cut(s) | 57 |
| FaeI | CATG | 6 cut(s) | 95, 193, 285, 378, 446, 460 |
| FatI | CATG | 6 cut(s) | 91, 189, 281, 374, 442, 456 |
| FblI | GTMKAC | 1 cut(s) | 13 |
| FokI | GGATG | 2 cut(s) | 379, 422 |
| GlaI | GCGC | 1 cut(s) | 566 |
| HaeII | RGCGCY | 1 cut(s) | 568 |
| HhaI | GCGC | 1 cut(s) | 567 |
| Hin1II | CATG | 6 cut(s) | 95, 193, 285, 378, 446, 460 |
| Hin6I | GCGC | 1 cut(s) | 565 |
| HinP1I | GCGC | 1 cut(s) | 565 |
| HincII | GTYRAC | 2 cut(s) | 14, 228 |
| HindII | GTYRAC | 2 cut(s) | 14, 228 |
| HinfI | GANTC | 1 cut(s) | 532 |
| Hpy166II | GTNNAC | 3 cut(s) | 14, 52, 228 |
| Hpy188I | TCNGA | 3 cut(s) | 30, 245, 277 |
| Hpy188III | TCNNGA | 4 cut(s) | 401, 457, 491, 506 |
| Hpy8I | GTNNAC | 3 cut(s) | 14, 52, 228 |
| Hpy99I | CGWCG | 1 cut(s) | 18 |
| HpyAV | CCTTC | 1 cut(s) | 139 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 352, 520 |
| HpyCH4IV | ACGT | 1 cut(s) | 475 |
| HpyCH4V | TGCA | 4 cut(s) | 105, 343, 378, 538 |
| HpyF3I | CTNAG | 1 cut(s) | 402 |
| HpySE526I | ACGT | 1 cut(s) | 475 |
| Hsp92II | CATG | 6 cut(s) | 95, 193, 285, 378, 446, 460 |
| HspAI | GCGC | 1 cut(s) | 565 |
| Kzo9I | GATC | 3 cut(s) | 219, 493, 502 |
| LmnI | GCTCC | 4 cut(s) | 61, 451, 493, 562 |
| LpnPI | CCDG | 9 cut(s) | 32, 115, 225, 348, 378, 405, 414, 498, 504 |
| LweI | GCATC | 1 cut(s) | 476 |
| MaeII | ACGT | 1 cut(s) | 475 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 3 cut(s) | 221, 495, 504 |
| MboI | GATC | 3 cut(s) | 219, 493, 502 |
| MhlI | GDGCHC | 1 cut(s) | 66 |
| MluCI | AATT | 1 cut(s) | 513 |
| MnlI | CCTC | 2 cut(s) | 216, 550 |
| Mph1103I | ATGCAT | 1 cut(s) | 380 |
| MslI | CAYNNNNRTG | 2 cut(s) | 188, 365 |
| MspR9I | CCNGG | 1 cut(s) | 393 |
| Mva1269I | GAATGC | 2 cut(s) | 87, 396 |
| MvaI | CCWGG | 1 cut(s) | 393 |
| NdeII | GATC | 3 cut(s) | 219, 493, 502 |
| NlaIII | CATG | 6 cut(s) | 95, 193, 285, 378, 446, 460 |
| NsiI | ATGCAT | 1 cut(s) | 380 |
| NspI | RCATGY | 2 cut(s) | 285, 378 |
| PagI | TCATGA | 1 cut(s) | 456 |
| PciI | ACATGT | 1 cut(s) | 281 |
| PctI | GAATGC | 2 cut(s) | 87, 396 |
| PfeI | GAWTC | 1 cut(s) | 532 |
| PscI | ACATGT | 1 cut(s) | 281 |
| Psp6I | CCWGG | 1 cut(s) | 391 |
| PspGI | CCWGG | 1 cut(s) | 391 |
| PstI | CTGCAG | 1 cut(s) | 540 |
| RsaI | GTAC | 4 cut(s) | 53, 128, 256, 373 |
| RsaNI | GTAC | 4 cut(s) | 52, 127, 255, 372 |
| RseI | CAYNNNNRTG | 2 cut(s) | 188, 365 |
| SalI | GTCGAC | 1 cut(s) | 12 |
| Sau3AI | GATC | 3 cut(s) | 219, 493, 502 |
| ScrFI | CCNGG | 1 cut(s) | 393 |
| SduI | GDGCHC | 1 cut(s) | 66 |
| SetI | ASST | 7 cut(s) | 101, 150, 199, 439, 478, 487, 561 |
| SfaNI | GCATC | 1 cut(s) | 476 |
| SfcI | CTRYAG | 1 cut(s) | 536 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 188, 365 |
| Sse9I | AATT | 1 cut(s) | 513 |
| StyD4I | CCNGG | 1 cut(s) | 391 |
| StyI | CCWWGG | 1 cut(s) | 57 |
| TaaI | ACNGT | 3 cut(s) | 70, 352, 520 |
| TaiI | ACGT | 1 cut(s) | 478 |
| TaqI | TCGA | 1 cut(s) | 13 |
| TasI | AATT | 1 cut(s) | 513 |
| TatI | WGTACW | 2 cut(s) | 126, 371 |
| TfiI | GAWTC | 1 cut(s) | 532 |
| TscAI | CASTG | 2 cut(s) | 73, 367 |
| TspDTI | ATGAA | 2 cut(s) | 80, 189 |
| TspRI | CASTG | 2 cut(s) | 73, 367 |
| XceI | RCATGY | 2 cut(s) | 285, 378 |
| XmiI | GTMKAC | 1 cut(s) | 13 |
| Zsp2I | ATGCAT | 1 cut(s) | 380 |