DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 44 |
| AciI | CCGC | 1 cut(s) | 44 |
| AclWI | GGATC | 1 cut(s) | 152 |
| AcvI | CACGTG | 1 cut(s) | 187 |
| AfaI | GTAC | 2 cut(s) | 7, 50 |
| AluBI | AGCT | 1 cut(s) | 104 |
| AluI | AGCT | 1 cut(s) | 104 |
| AlwI | GGATC | 1 cut(s) | 152 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 72, 180 |
| BbrPI | CACGTG | 1 cut(s) | 187 |
| BccI | CCATC | 1 cut(s) | 101 |
| BfaI | CTAG | 1 cut(s) | 155 |
| BfmI | CTRYAG | 1 cut(s) | 120 |
| BmsI | GCATC | 1 cut(s) | 21 |
| BpmI | CTGGAG | 1 cut(s) | 134 |
| BsaAI | YACGTR | 1 cut(s) | 187 |
| Bse1I | ACTGG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 117 |
| Bsp143I | GATC | 1 cut(s) | 157 |
| BspACI | CCGC | 1 cut(s) | 44 |
| BspHI | TCATGA | 1 cut(s) | 197 |
| BspPI | GGATC | 1 cut(s) | 152 |
| BsrBI | CCGCTC | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 117 |
| BssMI | GATC | 1 cut(s) | 157 |
| Bst4CI | ACNGT | 1 cut(s) | 136 |
| BstBAI | YACGTR | 1 cut(s) | 187 |
| BstKTI | GATC | 1 cut(s) | 160 |
| BstMBI | GATC | 1 cut(s) | 157 |
| BstNSI | RCATGY | 1 cut(s) | 12 |
| BstSFI | CTRYAG | 1 cut(s) | 120 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| CciI | TCATGA | 1 cut(s) | 197 |
| Csp6I | GTAC | 2 cut(s) | 6, 49 |
| CviAII | CATG | 2 cut(s) | 9, 198 |
| CviJI | RGCY | 2 cut(s) | 104, 119 |
| CviKI_1 | RGCY | 2 cut(s) | 104, 119 |
| CviQI | GTAC | 2 cut(s) | 6, 49 |
| DpnI | GATC | 1 cut(s) | 159 |
| DpnII | GATC | 1 cut(s) | 157 |
| Eco72I | CACGTG | 1 cut(s) | 187 |
| EcoT22I | ATGCAT | 1 cut(s) | 14 |
| FaeI | CATG | 2 cut(s) | 12, 201 |
| FaiI | YATR | 2 cut(s) | 10, 199 |
| FatI | CATG | 2 cut(s) | 8, 197 |
| FspBI | CTAG | 1 cut(s) | 155 |
| GsuI | CTGGAG | 1 cut(s) | 134 |
| Hin1II | CATG | 2 cut(s) | 12, 201 |
| HinfI | GANTC | 1 cut(s) | 176 |
| Hpy188I | TCNGA | 1 cut(s) | 67 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 161, 198 |
| HpyCH4III | ACNGT | 1 cut(s) | 136 |
| HpyCH4IV | ACGT | 1 cut(s) | 186 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 190 |
| HpySE526I | ACGT | 1 cut(s) | 186 |
| Hsp92II | CATG | 2 cut(s) | 12, 201 |
| Kzo9I | GATC | 1 cut(s) | 157 |
| LmnI | GCTCC | 2 cut(s) | 85, 101 |
| LpnPI | CCDG | 2 cut(s) | 98, 174 |
| LweI | GCATC | 1 cut(s) | 21 |
| MaeI | CTAG | 1 cut(s) | 155 |
| MaeII | ACGT | 1 cut(s) | 186 |
| MalI | GATC | 1 cut(s) | 159 |
| MbiI | CCGCTC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 157 |
| MboII | GAAGA | 1 cut(s) | 7 |
| MfeI | CAATTG | 1 cut(s) | 191 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 1 cut(s) | 191 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| MnlI | CCTC | 1 cut(s) | 109 |
| Mph1103I | ATGCAT | 1 cut(s) | 14 |
| MroXI | GAANNNNTTC | 2 cut(s) | 72, 180 |
| MslI | CAYNNNNRTG | 1 cut(s) | 185 |
| MunI | CAATTG | 1 cut(s) | 191 |
| NdeII | GATC | 1 cut(s) | 157 |
| NlaIII | CATG | 2 cut(s) | 12, 201 |
| NsiI | ATGCAT | 1 cut(s) | 14 |
| NspI | RCATGY | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 2 cut(s) | 72, 180 |
| PfeI | GAWTC | 1 cut(s) | 176 |
| PmaCI | CACGTG | 1 cut(s) | 187 |
| PmlI | CACGTG | 1 cut(s) | 187 |
| Ppu21I | YACGTR | 1 cut(s) | 187 |
| PspCI | CACGTG | 1 cut(s) | 187 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 135, 167 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 2 cut(s) | 7, 50 |
| RsaNI | GTAC | 2 cut(s) | 6, 49 |
| RseI | CAYNNNNRTG | 1 cut(s) | 185 |
| Sau3AI | GATC | 1 cut(s) | 157 |
| SetI | ASST | 3 cut(s) | 106, 153, 189 |
| SfaNI | GCATC | 1 cut(s) | 21 |
| SfcI | CTRYAG | 1 cut(s) | 120 |
| SgeI | CNNG | 8 cut(s) | 21, 47, 89, 125, 167, 173, 184, 197 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 185 |
| Sse9I | AATT | 1 cut(s) | 191 |
| SsiI | CCGC | 1 cut(s) | 44 |
| SspMI | CTAG | 1 cut(s) | 155 |
| TaaI | ACNGT | 1 cut(s) | 136 |
| TaiI | ACGT | 1 cut(s) | 189 |
| TasI | AATT | 1 cut(s) | 191 |
| TatI | WGTACW | 2 cut(s) | 5, 48 |
| TfiI | GAWTC | 1 cut(s) | 176 |
| TspDTI | ATGAA | 1 cut(s) | 7 |
| XceI | RCATGY | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 2 cut(s) | 72, 180 |
| XspI | CTAG | 1 cut(s) | 155 |
| Zsp2I | ATGCAT | 1 cut(s) | 14 |