DNA recombination
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 95 |
| AccBSI | CCGCTC | 1 cut(s) | 44 |
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 2 cut(s) | 44, 252 |
| AclWI | GGATC | 1 cut(s) | 171 |
| AcsI | RAATTY | 1 cut(s) | 87 |
| AfaI | GTAC | 1 cut(s) | 7 |
| AgsI | TTSAA | 1 cut(s) | 293 |
| AluBI | AGCT | 1 cut(s) | 122 |
| AluI | AGCT | 1 cut(s) | 122 |
| Alw21I | GWGCWC | 2 cut(s) | 51, 247 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| Alw44I | GTGCAC | 1 cut(s) | 243 |
| AlwI | GGATC | 1 cut(s) | 171 |
| ApaLI | GTGCAC | 1 cut(s) | 243 |
| ApoI | RAATTY | 1 cut(s) | 87 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 72 |
| AspLEI | GCGC | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 1 cut(s) | 295 |
| BaeGI | GKGCMC | 1 cut(s) | 247 |
| Bbv12I | GWGCWC | 2 cut(s) | 51, 247 |
| BccI | CCATC | 1 cut(s) | 119 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 174 |
| BmsI | GCATC | 1 cut(s) | 21 |
| BpmI | CTGGAG | 1 cut(s) | 152 |
| BsaI | GGTCTC | 1 cut(s) | 277 |
| Bse1I | ACTGG | 1 cut(s) | 135 |
| BseNI | ACTGG | 1 cut(s) | 135 |
| BseSI | GKGCMC | 1 cut(s) | 247 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BsiHKAI | GWGCWC | 2 cut(s) | 51, 247 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| Bso31I | GGTCTC | 1 cut(s) | 277 |
| Bsp1286I | GDGCHC | 2 cut(s) | 51, 247 |
| Bsp143I | GATC | 1 cut(s) | 176 |
| BspACI | CCGC | 2 cut(s) | 44, 252 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspPI | GGATC | 1 cut(s) | 171 |
| BspTNI | GGTCTC | 1 cut(s) | 277 |
| BsrBI | CCGCTC | 1 cut(s) | 44 |
| BsrI | ACTGG | 1 cut(s) | 135 |
| BssMI | GATC | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 1 cut(s) | 155 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstHHI | GCGC | 1 cut(s) | 252 |
| BstKTI | GATC | 1 cut(s) | 179 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 1 cut(s) | 176 |
| BstNSI | RCATGY | 1 cut(s) | 12 |
| BstSLI | GKGCMC | 1 cut(s) | 247 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BstX2I | RGATCY | 1 cut(s) | 176 |
| BstYI | RGATCY | 1 cut(s) | 176 |
| BtsI | GCAGTG | 1 cut(s) | 245 |
| BtsIMutI | CAGTG | 1 cut(s) | 245 |
| CfoI | GCGC | 1 cut(s) | 252 |
| Csp6I | GTAC | 1 cut(s) | 6 |
| CviAII | CATG | 2 cut(s) | 9, 77 |
| CviJI | RGCY | 3 cut(s) | 122, 137, 315 |
| CviKI_1 | RGCY | 3 cut(s) | 122, 137, 315 |
| CviQI | GTAC | 1 cut(s) | 6 |
| DpnI | GATC | 1 cut(s) | 178 |
| DpnII | GATC | 1 cut(s) | 176 |
| Eco31I | GGTCTC | 1 cut(s) | 277 |
| EcoT22I | ATGCAT | 1 cut(s) | 14 |
| FaeI | CATG | 2 cut(s) | 12, 80 |
| FaiI | YATR | 4 cut(s) | 10, 78, 95, 334 |
| FatI | CATG | 2 cut(s) | 8, 76 |
| FspBI | CTAG | 1 cut(s) | 174 |
| GlaI | GCGC | 1 cut(s) | 251 |
| GsuI | CTGGAG | 1 cut(s) | 152 |
| HhaI | GCGC | 1 cut(s) | 252 |
| Hin1II | CATG | 2 cut(s) | 12, 80 |
| Hin6I | GCGC | 1 cut(s) | 250 |
| HinP1I | GCGC | 1 cut(s) | 250 |
| HphI | GGTGA | 1 cut(s) | 295 |
| Hpy166II | GTNNAC | 1 cut(s) | 245 |
| Hpy188I | TCNGA | 2 cut(s) | 67, 283 |
| Hpy188III | TCNNGA | 2 cut(s) | 35, 180 |
| Hpy8I | GTNNAC | 1 cut(s) | 245 |
| HpyAV | CCTTC | 1 cut(s) | 337 |
| HpyCH4III | ACNGT | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 3 cut(s) | 12, 233, 245 |
| Hsp92II | CATG | 2 cut(s) | 12, 80 |
| HspAI | GCGC | 1 cut(s) | 250 |
| Kzo9I | GATC | 1 cut(s) | 176 |
| LmnI | GCTCC | 3 cut(s) | 46, 85, 119 |
| LpnPI | CCDG | 2 cut(s) | 116, 193 |
| LweI | GCATC | 1 cut(s) | 21 |
| MaeI | CTAG | 1 cut(s) | 174 |
| MalI | GATC | 1 cut(s) | 178 |
| MbiI | CCGCTC | 1 cut(s) | 44 |
| MboI | GATC | 1 cut(s) | 176 |
| MboII | GAAGA | 1 cut(s) | 7 |
| MfeI | CAATTG | 1 cut(s) | 266 |
| MflI | RGATCY | 1 cut(s) | 176 |
| MhlI | GDGCHC | 2 cut(s) | 51, 247 |
| MluCI | AATT | 5 cut(s) | 87, 216, 266, 276, 287 |
| MnlI | CCTC | 2 cut(s) | 127, 311 |
| Mph1103I | ATGCAT | 1 cut(s) | 14 |
| MroXI | GAANNNNTTC | 1 cut(s) | 72 |
| MunI | CAATTG | 1 cut(s) | 266 |
| MvnI | CGCG | 1 cut(s) | 252 |
| NdeII | GATC | 1 cut(s) | 176 |
| NlaIII | CATG | 2 cut(s) | 12, 80 |
| NsiI | ATGCAT | 1 cut(s) | 14 |
| NspI | RCATGY | 1 cut(s) | 12 |
| PdmI | GAANNNNTTC | 1 cut(s) | 72 |
| PsiI | TTATAA | 1 cut(s) | 95 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 154, 186 |
| PsuI | RGATCY | 1 cut(s) | 176 |
| RsaI | GTAC | 1 cut(s) | 7 |
| RsaNI | GTAC | 1 cut(s) | 6 |
| Sau3AI | GATC | 1 cut(s) | 176 |
| SduI | GDGCHC | 2 cut(s) | 51, 247 |
| SetI | ASST | 2 cut(s) | 124, 172 |
| SfaNI | GCATC | 1 cut(s) | 21 |
| SgeI | CNNG | 9 cut(s) | 21, 47, 89, 96, 143, 186, 192, 263, 328 |
| Sse9I | AATT | 5 cut(s) | 87, 216, 266, 276, 287 |
| SsiI | CCGC | 2 cut(s) | 44, 252 |
| SspMI | CTAG | 1 cut(s) | 174 |
| TaaI | ACNGT | 1 cut(s) | 155 |
| TasI | AATT | 5 cut(s) | 87, 216, 266, 276, 287 |
| TatI | WGTACW | 1 cut(s) | 5 |
| TscAI | CASTG | 1 cut(s) | 252 |
| TspDTI | ATGAA | 2 cut(s) | 7, 65 |
| TspRI | CASTG | 1 cut(s) | 252 |
| VneI | GTGCAC | 1 cut(s) | 243 |
| XapI | RAATTY | 1 cut(s) | 87 |
| XceI | RCATGY | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 174 |
| Zsp2I | ATGCAT | 1 cut(s) | 14 |