Cytochrome c-type biogenesis ccda-like chloroplastic protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 169 |
| AccI | GTMKAC | 1 cut(s) | 123 |
| AcuI | CTGAAG | 1 cut(s) | 206 |
| AfaI | GTAC | 1 cut(s) | 334 |
| AgsI | TTSAA | 4 cut(s) | 13, 98, 146, 263 |
| AluBI | AGCT | 1 cut(s) | 258 |
| AluI | AGCT | 1 cut(s) | 258 |
| Alw26I | GTCTC | 1 cut(s) | 184 |
| AsuHPI | GGTGA | 2 cut(s) | 148, 317 |
| AxyI | CCTNAGG | 1 cut(s) | 204 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 169 |
| BccI | CCATC | 1 cut(s) | 239 |
| BcoDI | GTCTC | 1 cut(s) | 184 |
| BfaI | CTAG | 1 cut(s) | 51 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BmsI | GCATC | 1 cut(s) | 286 |
| BpuEI | CTTGAG | 1 cut(s) | 38 |
| BsaBI | GATNNNNATC | 1 cut(s) | 321 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 101, 131 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| Bse21I | CCTNAGG | 1 cut(s) | 204 |
| Bse8I | GATNNNNATC | 1 cut(s) | 321 |
| BseGI | GGATG | 1 cut(s) | 214 |
| BseJI | GATNNNNATC | 1 cut(s) | 321 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| BshNI | GGYRCC | 1 cut(s) | 169 |
| BsmAI | GTCTC | 1 cut(s) | 184 |
| Bsp143I | GATC | 1 cut(s) | 84 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspT107I | GGYRCC | 1 cut(s) | 169 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssMI | GATC | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 1 cut(s) | 182 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstF5I | GGATG | 1 cut(s) | 214 |
| BstKTI | GATC | 1 cut(s) | 87 |
| BstMAI | GTCTC | 1 cut(s) | 184 |
| BstMBI | GATC | 1 cut(s) | 84 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 74, 233, 296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 204 |
| BtsCI | GGATG | 1 cut(s) | 214 |
| BtsIMutI | CAGTG | 1 cut(s) | 80 |
| Csp6I | GTAC | 1 cut(s) | 333 |
| CviAII | CATG | 2 cut(s) | 32, 314 |
| CviJI | RGCY | 2 cut(s) | 103, 258 |
| CviKI_1 | RGCY | 2 cut(s) | 103, 258 |
| CviQI | GTAC | 1 cut(s) | 333 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| DpnI | GATC | 1 cut(s) | 86 |
| DpnII | GATC | 1 cut(s) | 84 |
| Eam1104I | CTCTTC | 1 cut(s) | 182 |
| EarI | CTCTTC | 1 cut(s) | 182 |
| Eco57I | CTGAAG | 1 cut(s) | 206 |
| Eco81I | CCTNAGG | 1 cut(s) | 204 |
| FaeI | CATG | 2 cut(s) | 35, 317 |
| FaiI | YATR | 9 cut(s) | 33, 165, 167, 287, 307, 309, 311, 315, 320 |
| FatI | CATG | 2 cut(s) | 31, 313 |
| FblI | GTMKAC | 1 cut(s) | 123 |
| FokI | GGATG | 1 cut(s) | 221 |
| FspBI | CTAG | 1 cut(s) | 51 |
| Hin1II | CATG | 2 cut(s) | 35, 317 |
| HincII | GTYRAC | 2 cut(s) | 109, 124 |
| HindII | GTYRAC | 2 cut(s) | 109, 124 |
| HinfI | GANTC | 2 cut(s) | 71, 91 |
| HphI | GGTGA | 2 cut(s) | 148, 317 |
| Hpy166II | GTNNAC | 3 cut(s) | 109, 124, 333 |
| Hpy188III | TCNNGA | 2 cut(s) | 88, 206 |
| Hpy8I | GTNNAC | 3 cut(s) | 109, 124, 333 |
| Hpy99I | CGWCG | 1 cut(s) | 125 |
| HpyAV | CCTTC | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 6 cut(s) | 42, 77, 227, 278, 299, 305 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 74, 233, 296 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 2 cut(s) | 35, 317 |
| Kzo9I | GATC | 1 cut(s) | 84 |
| LpnPI | CCDG | 3 cut(s) | 117, 186, 191 |
| LweI | GCATC | 1 cut(s) | 286 |
| MaeI | CTAG | 1 cut(s) | 51 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 1 cut(s) | 86 |
| MboI | GATC | 1 cut(s) | 84 |
| MboII | GAAGA | 2 cut(s) | 86, 199 |
| MluCI | AATT | 2 cut(s) | 146, 264 |
| MlyI | GAGTC | 1 cut(s) | 65 |
| MmeI | TCCRAC | 1 cut(s) | 157 |
| MnlI | CCTC | 1 cut(s) | 213 |
| MseI | TTAA | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 74, 233, 296 |
| NdeII | GATC | 1 cut(s) | 84 |
| NlaIII | CATG | 2 cut(s) | 35, 317 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 91 |
| PleI | GAGTC | 1 cut(s) | 65 |
| PpsI | GAGTC | 1 cut(s) | 65 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| RsaI | GTAC | 1 cut(s) | 334 |
| RsaNI | GTAC | 1 cut(s) | 333 |
| SalI | GTCGAC | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 267 |
| Sau3AI | GATC | 1 cut(s) | 84 |
| SchI | GAGTC | 1 cut(s) | 65 |
| SetI | ASST | 6 cut(s) | 132, 138, 205, 260, 330, 338 |
| SfaNI | GCATC | 1 cut(s) | 286 |
| SmlI | CTYRAG | 1 cut(s) | 17 |
| SmoI | CTYRAG | 1 cut(s) | 17 |
| Sse9I | AATT | 2 cut(s) | 146, 264 |
| SspMI | CTAG | 1 cut(s) | 51 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 1 cut(s) | 123 |
| TasI | AATT | 2 cut(s) | 146, 264 |
| TfiI | GAWTC | 1 cut(s) | 91 |
| Tru1I | TTAA | 1 cut(s) | 267 |
| Tru9I | TTAA | 1 cut(s) | 267 |
| TscAI | CASTG | 1 cut(s) | 87 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 109, 140 |
| TspRI | CASTG | 1 cut(s) | 87 |
| XmiI | GTMKAC | 1 cut(s) | 123 |
| XspI | CTAG | 1 cut(s) | 51 |