Cytochrome c-type biogenesis ccda-like chloroplastic protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AcoI | YGGCCR | 1 cut(s) | 49 |
| AcsI | RAATTY | 1 cut(s) | 133 |
| AcuI | CTGAAG | 1 cut(s) | 41 |
| AfeI | AGCGCT | 1 cut(s) | 18 |
| AgsI | TTSAA | 3 cut(s) | 98, 206, 216 |
| AjnI | CCWGG | 2 cut(s) | 180, 246 |
| AluBI | AGCT | 2 cut(s) | 93, 270 |
| AluI | AGCT | 2 cut(s) | 93, 270 |
| Aor51HI | AGCGCT | 1 cut(s) | 18 |
| AoxI | GGCC | 1 cut(s) | 49 |
| ApoI | RAATTY | 1 cut(s) | 133 |
| AspLEI | GCGC | 1 cut(s) | 19 |
| AspS9I | GGNCC | 1 cut(s) | 25 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BalI | TGGCCA | 1 cut(s) | 51 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BbsI | GAAGAC | 2 cut(s) | 110, 133 |
| BccI | CCATC | 2 cut(s) | 17, 74 |
| BciT130I | CCWGG | 2 cut(s) | 182, 248 |
| BfmI | CTRYAG | 1 cut(s) | 222 |
| BfoI | RGCGCY | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 2 cut(s) | 182, 248 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmgT120I | GGNCC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 2 cut(s) | 182, 248 |
| BpiI | GAAGAC | 2 cut(s) | 110, 133 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| BseBI | CCWGG | 2 cut(s) | 182, 248 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseMII | CTCAG | 1 cut(s) | 53 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BshFI | GGCC | 1 cut(s) | 51 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BslFI | GGGAC | 1 cut(s) | 212 |
| BsmFI | GGGAC | 1 cut(s) | 212 |
| BsnI | GGCC | 1 cut(s) | 51 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| BspANI | GGCC | 1 cut(s) | 51 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 2 cut(s) | 182, 248 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| BstC8I | GCNNGC | 1 cut(s) | 268 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstH2I | RGCGCY | 1 cut(s) | 20 |
| BstHHI | GCGC | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 248 |
| BstNI | CCWGG | 2 cut(s) | 182, 248 |
| BstSCI | CCNGG | 2 cut(s) | 180, 246 |
| BstSFI | CTRYAG | 1 cut(s) | 222 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstV2I | GAAGAC | 2 cut(s) | 110, 133 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 51 |
| BtsI | GCAGTG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 132 |
| Cac8I | GCNNGC | 1 cut(s) | 268 |
| CfoI | GCGC | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 25 |
| CviAII | CATG | 1 cut(s) | 151 |
| CviJI | RGCY | 5 cut(s) | 51, 93, 161, 251, 270 |
| CviKI_1 | RGCY | 5 cut(s) | 51, 93, 161, 251, 270 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| EaeI | YGGCCR | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco47III | AGCGCT | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 41 |
| EcoRII | CCWGG | 2 cut(s) | 180, 246 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 1 cut(s) | 154 |
| FaiI | YATR | 3 cut(s) | 122, 152, 224 |
| FaqI | GGGAC | 1 cut(s) | 212 |
| FatI | CATG | 1 cut(s) | 150 |
| GlaI | GCGC | 1 cut(s) | 18 |
| HaeII | RGCGCY | 1 cut(s) | 20 |
| HaeIII | GGCC | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 19 |
| Hin1II | CATG | 1 cut(s) | 154 |
| Hin6I | GCGC | 1 cut(s) | 17 |
| HinP1I | GCGC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 3 cut(s) | 14, 42, 237 |
| HpyAV | CCTTC | 1 cut(s) | 16 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 113 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 248 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| Hsp92II | CATG | 1 cut(s) | 154 |
| HspAI | GCGC | 1 cut(s) | 17 |
| LmnI | GCTCC | 1 cut(s) | 14 |
| LpnPI | CCDG | 4 cut(s) | 167, 194, 233, 260 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MboII | GAAGA | 2 cut(s) | 115, 133 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlsI | TGGCCA | 1 cut(s) | 51 |
| MluCI | AATT | 1 cut(s) | 133 |
| MluNI | TGGCCA | 1 cut(s) | 51 |
| MnlI | CCTC | 1 cut(s) | 48 |
| Mox20I | TGGCCA | 1 cut(s) | 51 |
| MscI | TGGCCA | 1 cut(s) | 51 |
| MslI | CAYNNNNRTG | 2 cut(s) | 125, 149 |
| Msp20I | TGGCCA | 1 cut(s) | 51 |
| MspR9I | CCNGG | 2 cut(s) | 182, 248 |
| MvaI | CCWGG | 2 cut(s) | 182, 248 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 248 |
| NlaIII | CATG | 1 cut(s) | 154 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| Psp6I | CCWGG | 2 cut(s) | 180, 246 |
| PspGI | CCWGG | 2 cut(s) | 180, 246 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 25 |
| RseI | CAYNNNNRTG | 2 cut(s) | 125, 149 |
| Sau96I | GGNCC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 2 cut(s) | 182, 248 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 4 cut(s) | 27, 40, 95, 272 |
| SfcI | CTRYAG | 1 cut(s) | 222 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 125, 149 |
| Sse9I | AATT | 1 cut(s) | 133 |
| StyD4I | CCNGG | 2 cut(s) | 180, 246 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TasI | AATT | 1 cut(s) | 133 |
| TscAI | CASTG | 1 cut(s) | 132 |
| TspDTI | ATGAA | 1 cut(s) | 116 |
| TspRI | CASTG | 1 cut(s) | 132 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 133 |