Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Reverse (-)

50202388 .. 50206218

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009282

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAGTACATGCATCTTCATCAATCCAAACATTCCCGACAGAGCGGAGTACAAACAAAGTTTTTCTGAACTATTTCTTGCTCCAACAAAACAAATAATAGGAGCTGATGGACTGGAGGCTGTAGAAAAAAAGACGGTCAAAGAACTCAACCTACTAGATCCAGAAACAGACAAGGATGTTTGCCAAGATTTTGCACCATTGGCAAGGAATGATGGAAACAACAGCTTTCTAATTAAGACATTTGTAAATCCCATAGCAGATACGCGGCAAATCTACCCTAATCCCTCAGACCCAAGTCAAAATCCACATCAAAACCCAAAAATCACTACCAACAACAGGAACAGAGCAAGAGAGTTCATCGCAAAAGCTTGTGTTTTGCGTTTTGATTGGATCCAGTTTGTGATGAGACGATTGGGTTTAGAACAAGTAGAACAGGTTTTCATCAAGTCTGCTGTTCTCAATCCTAATATTATTAGCCACGGGAATTCTACAGTCCTCTCATCTTTAATGGAAAAAGTCTGCTCAGAGCCGGAGAATTTGGAGGCTCAAGACAAATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

DUF223 Helitron_like_N PIF1 REPA_OB_2 Rep_fac-A_C

Protein Analysis

188

Amino Acids

21.15

Weight (kDa)

5.48

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	265
AciI	CCGC	2 cut(s)	44, 265
AclWI	GGATC	3 cut(s)	152, 385, 398
AcsI	RAATTY	2 cut(s)	484, 535
AfaI	GTAC	2 cut(s)	7, 50
AfiI	CCNNNNNNNGG	1 cut(s)	336
AluBI	AGCT	3 cut(s)	104, 225, 368
AluI	AGCT	3 cut(s)	104, 225, 368
Alw26I	GTCTC	1 cut(s)	400
AlwI	GGATC	3 cut(s)	152, 385, 398
ApoI	RAATTY	2 cut(s)	484, 535
Asp700I	GAANNNNTTC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	390
BccI	CCATC	2 cut(s)	101, 206
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	120, 489
BisI	GCNGC	1 cut(s)	266
BlsI	GCNGC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	392
BmsI	GCATC	1 cut(s)	21
BoxI	GACNNNNGTC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	2 cut(s)	117, 394
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	300, 537
BseNI	ACTGG	2 cut(s)	117, 394
Bsh1236I	CGCG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	530
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	400
BsmBI	CGTCTC	1 cut(s)	400
Bsp143I	GATC	2 cut(s)	157, 390
BspACI	CCGC	2 cut(s)	44, 265
BspCNI	CTCAG	2 cut(s)	299, 536
BspFNI	CGCG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	392
BspPI	GGATC	3 cut(s)	152, 385, 398
BsrBI	CCGCTC	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	117, 394
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	2 cut(s)	157, 390
Bst4CI	ACNGT	2 cut(s)	136, 493
BstDEI	CTNAG	2 cut(s)	286, 523
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	160, 393
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	2 cut(s)	157, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	12
BstPAI	GACNNNNGTC	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	120, 489
BstUI	CGCG	1 cut(s)	265
BstX2I	RGATCY	2 cut(s)	157, 390
BstYI	RGATCY	2 cut(s)	157, 390
BtgI	CCRYGG	1 cut(s)	478
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	6, 49
CviAII	CATG	1 cut(s)	9
CviJI	RGCY	7 cut(s)	104, 119, 225, 368, 477, 529, 545
CviKI_1	RGCY	7 cut(s)	104, 119, 225, 368, 477, 529, 545
CviQI	GTAC	2 cut(s)	6, 49
DdeI	CTNAG	2 cut(s)	286, 523
DpnI	GATC	2 cut(s)	159, 392
DpnII	GATC	2 cut(s)	157, 390
EcoRI	GAATTC	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	14
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	1 cut(s)	12
FaiI	YATR	2 cut(s)	10, 254
FatI	CATG	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	266
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	266
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	1 cut(s)	266
GsuI	CTGGAG	1 cut(s)	134
HapII	CCGG	1 cut(s)	530
Hin1II	CATG	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	366
HpaII	CCGG	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	67, 289, 526
Hpy188III	TCNNGA	3 cut(s)	35, 161, 548
HpyCH4III	ACNGT	2 cut(s)	136, 493
HpyCH4V	TGCA	2 cut(s)	12, 194
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	286, 523
Hsp92II	CATG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	157, 390
LmnI	GCTCC	2 cut(s)	85, 101
LpnPI	CCDG	6 cut(s)	98, 174, 322, 407, 419, 543
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	1 cut(s)	155
MalI	GATC	2 cut(s)	159, 392
MbiI	CCGCTC	1 cut(s)	44
MboI	GATC	2 cut(s)	157, 390
MboII	GAAGA	1 cut(s)	7
MflI	RGATCY	2 cut(s)	157, 390
MluCI	AATT	5 cut(s)	231, 484, 535, 554, 559
MmeI	TCCRAC	1 cut(s)	107
MnlI	CCTC	4 cut(s)	109, 295, 506, 535
Mph1103I	ATGCAT	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	4 cut(s)	234, 506, 557, 562
MspI	CCGG	1 cut(s)	530
MvnI	CGCG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	157, 390
NlaIII	CATG	1 cut(s)	12
NlaIV	GGNNCC	1 cut(s)	392
NsiI	ATGCAT	1 cut(s)	14
NspI	RCATGY	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	267
PshAI	GACNNNNGTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PsuI	RGATCY	2 cut(s)	157, 390
RsaI	GTAC	2 cut(s)	7, 50
RsaNI	GTAC	2 cut(s)	6, 49
SaqAI	TTAA	4 cut(s)	234, 506, 557, 562
SatI	GCNGC	1 cut(s)	266
Sau3AI	GATC	2 cut(s)	157, 390
SetI	ASST	5 cut(s)	106, 153, 227, 370, 438
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	2 cut(s)	120, 489
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	5 cut(s)	231, 484, 535, 554, 559
SsiI	CCGC	2 cut(s)	44, 265
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	2 cut(s)	136, 493
TasI	AATT	5 cut(s)	231, 484, 535, 554, 559
TatI	WGTACW	2 cut(s)	5, 48
TauI	GCSGC	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	234, 506, 557, 562
Tru9I	TTAA	4 cut(s)	234, 506, 557, 562
TspDTI	ATGAA	3 cut(s)	7, 346, 430
XapI	RAATTY	2 cut(s)	484, 535
XceI	RCATGY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	72
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.