Rh2DG310500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003943
Physical Location & Seq
Reverse (-)
38149766 .. 38153126
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG310500.1

Sequence Viewer

Length: 366 bp
ATGAGTTGGATGGAAATGGAAGTAGAAGCTCTTCTAATTCTAAATATACTAAAGACATGTTACCTGTTCACACCTCTGTTCATTGGTGGTGGAAAGGTCGATTTTGCCCTTGCTTTGCACCCAGAATCTCAGCCTGCCATTGCTATTTCGCTTTTCCGAGGGATGTGTGATGCGCATAAACAGATGGATTCTGGAACTCATCTGCAGTCTGACTCTGCAACTCTGATCGTCGATCTTCCACAGCCAGTCAGCCTTGTCTCCGTCGATAATGCGAAGGTGAAGTTTCAATTTTGTCCGAGTAATCCTCGCTTTGCTTCCGTCTCCAGGTTCCTCTCTCTCTCTAACTATATCCATGCAGCGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.3

Weight (kDa)

6.01

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 324
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 262, 325
ApeKI GCWGC 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 2 cut(s) 175, 361
AsuHPI GGTGA 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BccI CCATC 2 cut(s) 4, 178
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 262, 325
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 160
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 2 cut(s) 15, 168
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 324
BsmAI GTCTC 2 cut(s) 262, 325
BsmBI CGTCTC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 225, 232
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 329
BspMAI CTGCAG 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 225, 232
Bst2UI CCWGG 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 15, 168
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 175, 361
BstKTI GATC 2 cut(s) 228, 235
BstMAI GTCTC 2 cut(s) 262, 325
BstMBI GATC 2 cut(s) 225, 232
BstNI CCWGG 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 203
BtsCI GGATG 2 cut(s) 15, 168
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 2 cut(s) 175, 361
CviAII CATG 2 cut(s) 57, 353
CviJI RGCY 4 cut(s) 29, 133, 244, 252
CviKI_1 RGCY 4 cut(s) 29, 133, 244, 252
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 227, 234
DpnII GATC 2 cut(s) 225, 232
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 323
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 2 cut(s) 60, 356
FaiI YATR 5 cut(s) 47, 58, 177, 348, 354
FatI CATG 2 cut(s) 56, 352
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 22, 175
Fsp4HI GCNGC 1 cut(s) 357
FspAI RTGCGCAY 1 cut(s) 174
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 2 cut(s) 174, 360
GluI GCNGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 362
HhaI GCGC 2 cut(s) 175, 361
Hin1II CATG 2 cut(s) 60, 356
Hin6I GCGC 2 cut(s) 173, 359
HinP1I GCGC 2 cut(s) 173, 359
HinfI GANTC 3 cut(s) 125, 188, 212
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 4 cut(s) 158, 211, 225, 297
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 2 cut(s) 233, 266
HpyAV CCTTC 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 118, 205, 218, 356
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 2 cut(s) 60, 356
HspAI GCGC 2 cut(s) 173, 359
Kzo9I GATC 2 cut(s) 225, 232
LguI GCTCTTC 1 cut(s) 36
LpnPI CCDG 7 cut(s) 77, 135, 147, 177, 258, 310, 337
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 227, 234
MboI GATC 2 cut(s) 225, 232
MboII GAAGA 2 cut(s) 23, 227
MluCI AATT 2 cut(s) 36, 287
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 84, 152, 315, 341
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
NdeII GATC 2 cut(s) 225, 232
NlaIII CATG 2 cut(s) 60, 356
NlaIV GGNNCC 1 cut(s) 329
NsbI TGCGCA 1 cut(s) 174
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 125, 188
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 206
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 207
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 225, 232
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 325
SetI ASST 6 cut(s) 31, 66, 76, 99, 279, 329
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 36, 287
StyD4I CCNGG 1 cut(s) 323
TaqI TCGA 3 cut(s) 99, 231, 264
TasI AATT 2 cut(s) 36, 287
TfiI GAWTC 2 cut(s) 125, 188
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 2 cut(s) 250, 307
XceI RCATGY 1 cut(s) 60
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.