DNA recombination
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 255, 428 |
| Acc36I | ACCTGC | 1 cut(s) | 617 |
| AccB1I | GGYRCC | 1 cut(s) | 579 |
| AccBSI | CCGCTC | 1 cut(s) | 377 |
| AciI | CCGC | 2 cut(s) | 377, 555 |
| AclWI | GGATC | 1 cut(s) | 503 |
| AcsI | RAATTY | 3 cut(s) | 81, 186, 420 |
| AcuI | CTGAAG | 2 cut(s) | 141, 201 |
| AcvI | CACGTG | 1 cut(s) | 538 |
| AfaI | GTAC | 3 cut(s) | 203, 340, 383 |
| AfeI | AGCGCT | 1 cut(s) | 593 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 626 |
| AgsI | TTSAA | 4 cut(s) | 49, 262, 563, 599 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 145, 177 |
| AluBI | AGCT | 2 cut(s) | 37, 455 |
| AluI | AGCT | 2 cut(s) | 37, 455 |
| Alw26I | GTCTC | 1 cut(s) | 213 |
| AlwI | GGATC | 1 cut(s) | 503 |
| Aor51HI | AGCGCT | 1 cut(s) | 593 |
| ApoI | RAATTY | 3 cut(s) | 81, 186, 420 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 405, 531 |
| AspLEI | GCGC | 1 cut(s) | 594 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BanI | GGYRCC | 1 cut(s) | 579 |
| BauI | CACGAG | 1 cut(s) | 13 |
| BbrPI | CACGTG | 1 cut(s) | 538 |
| BccI | CCATC | 1 cut(s) | 452 |
| BcoDI | GTCTC | 1 cut(s) | 213 |
| BfaI | CTAG | 2 cut(s) | 110, 506 |
| BfmI | CTRYAG | 1 cut(s) | 471 |
| BfoI | RGCGCY | 1 cut(s) | 595 |
| BfuAI | ACCTGC | 1 cut(s) | 617 |
| BglII | AGATCT | 1 cut(s) | 42 |
| BmiI | GGNNCC | 1 cut(s) | 581 |
| BmsI | GCATC | 1 cut(s) | 354 |
| BpmI | CTGGAG | 2 cut(s) | 23, 485 |
| BsaAI | YACGTR | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 626 |
| Bse1I | ACTGG | 2 cut(s) | 317, 468 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BseMII | CTCAG | 1 cut(s) | 226 |
| BseNI | ACTGG | 2 cut(s) | 317, 468 |
| BshNI | GGYRCC | 1 cut(s) | 579 |
| BslFI | GGGAC | 1 cut(s) | 537 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BsmAI | GTCTC | 1 cut(s) | 213 |
| BsmFI | GGGAC | 1 cut(s) | 537 |
| Bsp143I | GATC | 3 cut(s) | 42, 57, 508 |
| BspACI | CCGC | 2 cut(s) | 377, 555 |
| BspCNI | CTCAG | 1 cut(s) | 225 |
| BspLI | GGNNCC | 1 cut(s) | 581 |
| BspMI | ACCTGC | 1 cut(s) | 617 |
| BspPI | GGATC | 1 cut(s) | 503 |
| BspT107I | GGYRCC | 1 cut(s) | 579 |
| BsrBI | CCGCTC | 1 cut(s) | 377 |
| BsrI | ACTGG | 2 cut(s) | 317, 468 |
| BssMI | GATC | 3 cut(s) | 42, 57, 508 |
| BssSI | CACGAG | 1 cut(s) | 13 |
| Bst2BI | CACGAG | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 4 cut(s) | 22, 269, 487, 639 |
| BstBAI | YACGTR | 1 cut(s) | 538 |
| BstDEI | CTNAG | 1 cut(s) | 212 |
| BstH2I | RGCGCY | 1 cut(s) | 595 |
| BstHHI | GCGC | 1 cut(s) | 594 |
| BstKTI | GATC | 3 cut(s) | 45, 60, 511 |
| BstMAI | GTCTC | 1 cut(s) | 213 |
| BstMBI | GATC | 3 cut(s) | 42, 57, 508 |
| BstNSI | RCATGY | 1 cut(s) | 345 |
| BstSFI | CTRYAG | 1 cut(s) | 471 |
| BstX2I | RGATCY | 2 cut(s) | 42, 508 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 576 |
| BstYI | RGATCY | 2 cut(s) | 42, 508 |
| BveI | ACCTGC | 1 cut(s) | 617 |
| CfoI | GCGC | 1 cut(s) | 594 |
| Csp6I | GTAC | 3 cut(s) | 202, 339, 382 |
| CviAII | CATG | 4 cut(s) | 63, 334, 342, 410 |
| CviJI | RGCY | 4 cut(s) | 37, 157, 455, 470 |
| CviKI_1 | RGCY | 4 cut(s) | 37, 157, 455, 470 |
| CviQI | GTAC | 3 cut(s) | 202, 339, 382 |
| DdeI | CTNAG | 1 cut(s) | 212 |
| DpnI | GATC | 3 cut(s) | 44, 59, 510 |
| DpnII | GATC | 3 cut(s) | 42, 57, 508 |
| Eco47III | AGCGCT | 1 cut(s) | 593 |
| Eco57I | CTGAAG | 2 cut(s) | 141, 201 |
| Eco72I | CACGTG | 1 cut(s) | 538 |
| EcoT22I | ATGCAT | 1 cut(s) | 347 |
| FaeI | CATG | 4 cut(s) | 66, 337, 345, 413 |
| FaqI | GGGAC | 1 cut(s) | 537 |
| FatI | CATG | 4 cut(s) | 62, 333, 341, 409 |
| FauI | CCCGC | 1 cut(s) | 562 |
| FspBI | CTAG | 2 cut(s) | 110, 506 |
| GlaI | GCGC | 1 cut(s) | 593 |
| GsuI | CTGGAG | 2 cut(s) | 23, 485 |
| HaeII | RGCGCY | 1 cut(s) | 595 |
| HhaI | GCGC | 1 cut(s) | 594 |
| Hin1II | CATG | 4 cut(s) | 66, 337, 345, 413 |
| Hin6I | GCGC | 1 cut(s) | 592 |
| HinP1I | GCGC | 1 cut(s) | 592 |
| HinfI | GANTC | 2 cut(s) | 527, 550 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 4 cut(s) | 134, 215, 400, 589 |
| Hpy188III | TCNNGA | 6 cut(s) | 40, 46, 179, 368, 512, 604 |
| HpyAV | CCTTC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 4 cut(s) | 22, 269, 487, 639 |
| HpyCH4IV | ACGT | 1 cut(s) | 537 |
| HpyCH4V | TGCA | 5 cut(s) | 66, 146, 284, 345, 541 |
| HpyF3I | CTNAG | 1 cut(s) | 212 |
| HpySE526I | ACGT | 1 cut(s) | 537 |
| Hsp92II | CATG | 4 cut(s) | 66, 337, 345, 413 |
| HspAI | GCGC | 1 cut(s) | 592 |
| Kzo9I | GATC | 3 cut(s) | 42, 57, 508 |
| LmnI | GCTCC | 3 cut(s) | 42, 418, 452 |
| LweI | GCATC | 1 cut(s) | 354 |
| MaeI | CTAG | 2 cut(s) | 110, 506 |
| MaeII | ACGT | 1 cut(s) | 537 |
| MalI | GATC | 3 cut(s) | 44, 59, 510 |
| MbiI | CCGCTC | 1 cut(s) | 377 |
| MboI | GATC | 3 cut(s) | 42, 57, 508 |
| MboII | GAAGA | 1 cut(s) | 340 |
| MfeI | CAATTG | 1 cut(s) | 558 |
| MflI | RGATCY | 2 cut(s) | 42, 508 |
| MluCI | AATT | 6 cut(s) | 72, 81, 186, 420, 542, 558 |
| MlyI | GAGTC | 1 cut(s) | 559 |
| MmeI | TCCRAC | 1 cut(s) | 458 |
| MnlI | CCTC | 4 cut(s) | 128, 223, 255, 460 |
| Mph1103I | ATGCAT | 1 cut(s) | 347 |
| MroXI | GAANNNNTTC | 2 cut(s) | 405, 531 |
| MseI | TTAA | 2 cut(s) | 32, 323 |
| MslI | CAYNNNNRTG | 1 cut(s) | 536 |
| MunI | CAATTG | 1 cut(s) | 558 |
| NdeII | GATC | 3 cut(s) | 42, 57, 508 |
| NlaIII | CATG | 4 cut(s) | 66, 337, 345, 413 |
| NlaIV | GGNNCC | 1 cut(s) | 581 |
| NsiI | ATGCAT | 1 cut(s) | 347 |
| NspI | RCATGY | 1 cut(s) | 345 |
| PdmI | GAANNNNTTC | 2 cut(s) | 405, 531 |
| PfeI | GAWTC | 1 cut(s) | 527 |
| PflFI | GACNNNGTC | 1 cut(s) | 269 |
| PleI | GAGTC | 1 cut(s) | 558 |
| PmaCI | CACGTG | 1 cut(s) | 538 |
| PmlI | CACGTG | 1 cut(s) | 538 |
| PpsI | GAGTC | 1 cut(s) | 558 |
| Ppu21I | YACGTR | 1 cut(s) | 538 |
| PsiI | TTATAA | 2 cut(s) | 255, 428 |
| PspCI | CACGTG | 1 cut(s) | 538 |
| PspN4I | GGNNCC | 1 cut(s) | 581 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 10, 42, 322, 354, 486, 518 |
| PsuI | RGATCY | 2 cut(s) | 42, 508 |
| PsyI | GACNNNGTC | 1 cut(s) | 269 |
| RsaI | GTAC | 3 cut(s) | 203, 340, 383 |
| RsaNI | GTAC | 3 cut(s) | 202, 339, 382 |
| RseI | CAYNNNNRTG | 1 cut(s) | 536 |
| SaqAI | TTAA | 2 cut(s) | 32, 323 |
| Sau3AI | GATC | 3 cut(s) | 42, 57, 508 |
| SchI | GAGTC | 1 cut(s) | 559 |
| SfaNI | GCATC | 1 cut(s) | 354 |
| SfcI | CTRYAG | 1 cut(s) | 471 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 536 |
| Sse9I | AATT | 6 cut(s) | 72, 81, 186, 420, 542, 558 |
| SsiI | CCGC | 2 cut(s) | 377, 555 |
| SspMI | CTAG | 2 cut(s) | 110, 506 |
| TaaI | ACNGT | 4 cut(s) | 22, 269, 487, 639 |
| TaiI | ACGT | 1 cut(s) | 540 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TasI | AATT | 6 cut(s) | 72, 81, 186, 420, 542, 558 |
| TatI | WGTACW | 2 cut(s) | 338, 381 |
| TfiI | GAWTC | 1 cut(s) | 527 |
| Tru1I | TTAA | 2 cut(s) | 32, 323 |
| Tru9I | TTAA | 2 cut(s) | 32, 323 |
| TspDTI | ATGAA | 2 cut(s) | 340, 398 |
| Tth111I | GACNNNGTC | 1 cut(s) | 269 |
| XapI | RAATTY | 3 cut(s) | 81, 186, 420 |
| XceI | RCATGY | 1 cut(s) | 345 |
| XmnI | GAANNNNTTC | 2 cut(s) | 405, 531 |
| XspI | CTAG | 2 cut(s) | 110, 506 |
| Zsp2I | ATGCAT | 1 cut(s) | 347 |