Cytochrome c-type biogenesis ccda-like chloroplastic protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 4 |
| AfeI | AGCGCT | 2 cut(s) | 18, 227 |
| AgsI | TTSAA | 1 cut(s) | 95 |
| AjnI | CCWGG | 1 cut(s) | 156 |
| AluBI | AGCT | 2 cut(s) | 90, 197 |
| AluI | AGCT | 2 cut(s) | 90, 197 |
| Alw26I | GTCTC | 2 cut(s) | 175, 195 |
| Aor51HI | AGCGCT | 2 cut(s) | 18, 227 |
| AoxI | GGCC | 1 cut(s) | 25 |
| ApeKI | GCWGC | 2 cut(s) | 84, 87 |
| AspLEI | GCGC | 2 cut(s) | 19, 228 |
| AspS9I | GGNCC | 1 cut(s) | 25 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BanI | GGYRCC | 1 cut(s) | 4 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BbvI | GCAGC | 2 cut(s) | 96, 99 |
| BccI | CCATC | 1 cut(s) | 71 |
| BciT130I | CCWGG | 1 cut(s) | 158 |
| BcoDI | GTCTC | 2 cut(s) | 175, 195 |
| BfoI | RGCGCY | 2 cut(s) | 20, 229 |
| BisI | GCNGC | 2 cut(s) | 85, 88 |
| BlsI | GCNGC | 2 cut(s) | 86, 89 |
| Bme1390I | CCNGG | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 158 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 4 cut(s) | 41, 210, 214, 219 |
| Bse1I | ACTGG | 1 cut(s) | 209 |
| Bse3DI | GCAATG | 1 cut(s) | 183 |
| BseBI | CCWGG | 1 cut(s) | 158 |
| BseMI | GCAATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 186 |
| BseNI | ACTGG | 1 cut(s) | 209 |
| BseRI | GAGGAG | 1 cut(s) | 207 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BseXI | GCAGC | 2 cut(s) | 96, 99 |
| BshFI | GGCC | 1 cut(s) | 27 |
| BshNI | GGYRCC | 1 cut(s) | 4 |
| BsmAI | GTCTC | 2 cut(s) | 175, 195 |
| BsnI | GGCC | 1 cut(s) | 27 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| BspANI | GGCC | 1 cut(s) | 27 |
| BspCNI | CTCAG | 1 cut(s) | 185 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspT107I | GGYRCC | 1 cut(s) | 4 |
| BsrDI | GCAATG | 1 cut(s) | 183 |
| BsrI | ACTGG | 1 cut(s) | 209 |
| Bst2UI | CCWGG | 1 cut(s) | 158 |
| BstDEI | CTNAG | 1 cut(s) | 172 |
| BstH2I | RGCGCY | 2 cut(s) | 20, 229 |
| BstHHI | GCGC | 2 cut(s) | 19, 228 |
| BstMAI | GTCTC | 2 cut(s) | 175, 195 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 128, 194 |
| BstNI | CCWGG | 1 cut(s) | 158 |
| BstSCI | CCNGG | 1 cut(s) | 156 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstV1I | GCAGC | 2 cut(s) | 96, 99 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BsuRI | GGCC | 1 cut(s) | 27 |
| CfoI | GCGC | 2 cut(s) | 19, 228 |
| Cfr13I | GGNCC | 1 cut(s) | 25 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviJI | RGCY | 4 cut(s) | 27, 90, 137, 197 |
| CviKI_1 | RGCY | 4 cut(s) | 27, 90, 137, 197 |
| DdeI | CTNAG | 1 cut(s) | 172 |
| Eco47III | AGCGCT | 2 cut(s) | 18, 227 |
| EcoRII | CCWGG | 1 cut(s) | 156 |
| FaeI | CATG | 1 cut(s) | 130 |
| FaiI | YATR | 4 cut(s) | 119, 128, 180, 238 |
| FatI | CATG | 1 cut(s) | 126 |
| Fnu4HI | GCNGC | 2 cut(s) | 85, 88 |
| Fsp4HI | GCNGC | 2 cut(s) | 85, 88 |
| GlaI | GCGC | 2 cut(s) | 18, 227 |
| GluI | GCNGC | 2 cut(s) | 85, 88 |
| GsuI | CTGGAG | 4 cut(s) | 41, 210, 214, 219 |
| HaeII | RGCGCY | 2 cut(s) | 20, 229 |
| HaeIII | GGCC | 1 cut(s) | 27 |
| HhaI | GCGC | 2 cut(s) | 19, 228 |
| Hin1II | CATG | 1 cut(s) | 130 |
| Hin6I | GCGC | 2 cut(s) | 17, 226 |
| HinP1I | GCGC | 2 cut(s) | 17, 226 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy188III | TCNNGA | 1 cut(s) | 231 |
| HpyAV | CCTTC | 1 cut(s) | 155 |
| HpyCH4V | TGCA | 1 cut(s) | 59 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 128, 194 |
| HpyF3I | CTNAG | 1 cut(s) | 172 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| HspAI | GCGC | 2 cut(s) | 17, 226 |
| LmnI | GCTCC | 3 cut(s) | 14, 194, 233 |
| LpnPI | CCDG | 7 cut(s) | 5, 143, 170, 174, 183, 190, 236 |
| Lsp1109I | GCAGC | 2 cut(s) | 96, 99 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MnlI | CCTC | 3 cut(s) | 16, 185, 206 |
| MspR9I | CCNGG | 1 cut(s) | 158 |
| MvaI | CCWGG | 1 cut(s) | 158 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 128, 194 |
| NlaIII | CATG | 1 cut(s) | 130 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PfoI | TCCNGGA | 1 cut(s) | 156 |
| PkrI | GCNGC | 2 cut(s) | 86, 89 |
| Psp6I | CCWGG | 1 cut(s) | 156 |
| PspGI | CCWGG | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 25 |
| SatI | GCNGC | 2 cut(s) | 85, 88 |
| Sau96I | GGNCC | 1 cut(s) | 25 |
| ScrFI | CCNGG | 1 cut(s) | 158 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 4 cut(s) | 92, 166, 199, 217 |
| StyD4I | CCNGG | 1 cut(s) | 156 |
| TseI | GCWGC | 2 cut(s) | 84, 87 |
| TspDTI | ATGAA | 1 cut(s) | 113 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 16, 124 |