Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Reverse (-)

14293378 .. 14301012

Gene Structure 7635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCCTCAGCTGACTGATGATTTGCTTGATGGTGACTCCTTATGCTATATAAACAAATTGCAGGCAGCATATAGATACATATCTATAATCACACACTGTGATGATCATAATTCAGATCAAATCTCCTGGAATGTCCGTACTATATATGAACATTTTTGGAATAAGAATCGAGTTGTGAGGTACGTGGCTGATGAGGAAAAAGATAAGAGTTTATCCAACGAGATATATGGCACCTGTCGAGCGATAAACAGACATTATACACCTCGGGATGTTTGCCAAGATTTTGCACCATTGGCAAGGAATGATGGAAACAACAGCTTTCAAATTAAGACATTTGTAAATCCCATAGCAGGACCTCCACCCATCTTTCCAAGATCCGGGGCTTTACCGCCTTCAGCAAGGGCCAAGGAGGCATCAAAACTAGCAGTGACAGCGTCAATGGATGAGGAAGAAGATGATAGATCTGGTCTAGTAGGGGAGAGCAGCAAAAATTGCCGTGCTAGGGTTTTGGGGGAGGAAACTAGGTTGAGAGAAACTAGGGGTGGCTACAAATTTTTGAATCATAATCCAGACTCCGAGACGGCTACCTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

198

Amino Acids

22.37

Weight (kDa)

5.76

Isoelectric Point (pI)

41.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	369
AcsI	RAATTY	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	139, 182
AfiI	CCNNNNNNNGG	3 cut(s)	350, 377, 502
AgsI	TTSAA	2 cut(s)	323, 559
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	2 cut(s)	10, 318
AluI	AGCT	2 cut(s)	10, 318
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	65, 483
ApoI	RAATTY	1 cut(s)	551
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	353, 402
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	77, 495
BccI	CCATC	3 cut(s)	23, 299, 371
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	572
BfaI	CTAG	5 cut(s)	422, 470, 501, 522, 537
BglI	GCCNNNNNGGC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	461
BisI	GCNGC	2 cut(s)	66, 484
BlsI	GCNGC	2 cut(s)	67, 485
Bme1390I	CCNGG	2 cut(s)	127, 379
Bme18I	GGWCC	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	353, 402
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	127, 379
BmsI	GCATC	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	263, 378, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	350, 377, 502
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	3 cut(s)	263, 378, 405
BseGI	GGATG	2 cut(s)	274, 448
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	3 cut(s)	350, 377, 502
BseMII	CTCAG	1 cut(s)	20
BseXI	GCAGC	2 cut(s)	77, 495
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	378
BslI	CCNNNNNNNGG	3 cut(s)	350, 377, 502
BsmAI	GTCTC	1 cut(s)	572
BsmBI	CGTCTC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	103, 115, 374, 461
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	263, 378, 405
BssMI	GATC	4 cut(s)	103, 115, 374, 461
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	274, 448
BstKTI	GATC	4 cut(s)	106, 118, 377, 464
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	4 cut(s)	103, 115, 374, 461
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 410, 431, 492
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	125, 377
BstV1I	GCAGC	2 cut(s)	77, 495
BstX2I	RGATCY	2 cut(s)	374, 461
BstYI	RGATCY	2 cut(s)	374, 461
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	274, 448
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	94, 432
Cac8I	GCNNGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	353, 402
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	138, 181
CviJI	RGCY	7 cut(s)	10, 188, 318, 383, 404, 546, 584
CviKI_1	RGCY	7 cut(s)	10, 188, 318, 383, 404, 546, 584
CviQI	GTAC	2 cut(s)	138, 181
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	105, 117, 376, 463
DpnII	GATC	4 cut(s)	103, 115, 374, 461
DraIII	CACNNNGTG	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	66, 484
FokI	GGATG	2 cut(s)	281, 455
Fsp4HI	GCNGC	2 cut(s)	66, 484
FspBI	CTAG	5 cut(s)	422, 470, 501, 522, 537
GluI	GCNGC	2 cut(s)	66, 484
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	378
HgaI	GACGC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	35, 166, 559, 572
HpaII	CCGG	1 cut(s)	378
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	2 cut(s)	115, 577
Hpy188III	TCNNGA	2 cut(s)	266, 569
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	61, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 410, 431, 492
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 115, 374, 461
LpnPI	CCDG	8 cut(s)	47, 112, 139, 247, 336, 391, 450, 582
Lsp1109I	GCAGC	2 cut(s)	77, 495
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	5 cut(s)	422, 470, 501, 522, 537
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	32, 427
MalI	GATC	4 cut(s)	105, 117, 376, 463
MboI	GATC	4 cut(s)	103, 115, 374, 461
MboII	GAAGA	2 cut(s)	461, 464
MflI	RGATCY	2 cut(s)	374, 461
MluCI	AATT	5 cut(s)	56, 109, 324, 490, 551
MlyI	GAGTC	2 cut(s)	29, 566
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	15, 171, 187, 273, 366, 403, 439, 508
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	378
MspR9I	CCNGG	2 cut(s)	127, 379
MvaI	CCWGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	4 cut(s)	293, 410, 431, 492
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	103, 115, 374, 461
NlaIV	GGNNCC	1 cut(s)	232
NmuCI	GTSAC	2 cut(s)	32, 427
PfeI	GAWTC	2 cut(s)	166, 559
PflFI	GACNNNGTC	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	67, 485
PleI	GAGTC	2 cut(s)	29, 566
PpsI	GAGTC	2 cut(s)	29, 566
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	353
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	353, 402
PspPPI	RGGWCCY	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	374, 461
PsyI	GACNNNGTC	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	139, 182
RsaNI	GTAC	2 cut(s)	138, 181
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	66, 484
Sau3AI	GATC	4 cut(s)	103, 115, 374, 461
Sau96I	GGNCC	2 cut(s)	353, 402
SchI	GAGTC	2 cut(s)	29, 566
ScrFI	CCNGG	2 cut(s)	127, 379
SetI	ASST	9 cut(s)	12, 182, 186, 236, 265, 320, 358, 527, 590
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	5 cut(s)	56, 109, 324, 490, 551
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	5 cut(s)	422, 470, 501, 522, 537
StyD4I	CCNGG	2 cut(s)	125, 377
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	169, 238
TasI	AATT	5 cut(s)	56, 109, 324, 490, 551
TfiI	GAWTC	2 cut(s)	166, 559
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	2 cut(s)	101, 432
TseFI	GTSAC	2 cut(s)	32, 427
TseI	GCWGC	2 cut(s)	65, 483
Tsp45I	GTSAC	2 cut(s)	32, 427
TspDTI	ATGAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	101, 432
Tth111I	GACNNNGTC	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	551
XspI	CTAG	5 cut(s)	422, 470, 501, 522, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.