Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Forward (+)

39646239 .. 39648115

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTGGCGGTAGAGGGCCTCGTCGAAGAGCCGGAGACCATGACGACTTTGTTTTGTAGATCGCGCCATGTCTCCAAGTCGTCACTGGCGATTGTGAGGGAGCGTGGCATTGGAATAGTTCCATATAGTCCTCTGGGTCGTGGTTTTTTCGCAGGTAAAGCAGTTGTCGAAAGTTTGGATCCAAATGTTCTTGCGGCCGCACATCCTCGGCTCACTGGAGAGAACTTGGAGAAGAACATAAACATATACCATGCAATAGAACGCCTTGCTACAAAGCACCATTACTCTCCTGCTCAACTAGCACTGTCGTGGGTTCTCCACCAAGGCGATGACGTTGTACCAATCCCCGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTGAATCTCAAGGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCCGGTGATAAGAGTTTTGAAAGCACGAGTCATGTGCAATGGAAATTCGCCAACACTCCTCAAAAGACTCTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

177

Amino Acids

19.39

Weight (kDa)

6.15

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	21 - 145	3.7e-20	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccII	CGCG	1 cut(s)	64
AciI	CCGC	3 cut(s)	8, 194, 198
AclWI	GGATC	2 cut(s)	173, 186
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	500
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	476
AleI	CACNNNNGTG	1 cut(s)	307
Alw26I	GTCTC	2 cut(s)	29, 76
AlwI	GGATC	2 cut(s)	173, 186
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	16, 195
ApoI	RAATTY	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	348, 349
AsuHPI	GGTGA	1 cut(s)	473
AvaI	CYCGRG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	481
BbsI	GAAGAC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	2 cut(s)	348, 349
BcoDI	GTCTC	2 cut(s)	29, 76
BfaI	CTAG	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	195, 198
BlsI	GCNGC	2 cut(s)	196, 199
Bme1390I	CCNGG	2 cut(s)	348, 349
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	180, 388
BmrFI	CCNGG	2 cut(s)	348, 349
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	389
BpuMI	CCSGG	2 cut(s)	348, 349
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	206, 322, 346, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	2 cut(s)	90, 220
Bse3DI	GCAATG	1 cut(s)	500
BseDI	CCNNGG	4 cut(s)	206, 322, 346, 347
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	500
BseNI	ACTGG	2 cut(s)	90, 220
BseRI	GAGGAG	1 cut(s)	504
BseX3I	CGGCCG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	18, 197
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	32, 348, 459
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	2 cut(s)	29, 76
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	18, 197
Bso31I	GGTCTC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	59, 178
BspACI	CCGC	3 cut(s)	8, 194, 198
BspANI	GGCC	2 cut(s)	18, 197
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	180, 388
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	173, 186
BspQI	GCTCTTC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	90, 220
BssAI	RCCGGY	1 cut(s)	458
BssECI	CCNNGG	4 cut(s)	206, 322, 346, 347
BssMI	GATC	2 cut(s)	59, 178
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	306
Bst6I	CTCTTC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	2 cut(s)	62, 181
BstMAI	GTCTC	2 cut(s)	29, 76
BstMBI	GATC	2 cut(s)	59, 178
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 299
BstSCI	CCNGG	2 cut(s)	346, 347
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	417
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BstZI	CGGCCG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	2 cut(s)	18, 197
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	83, 213, 302
BveI	ACCTGC	1 cut(s)	143
CciNI	GCGGCCGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	458
Cfr13I	GGNCC	1 cut(s)	16
Cfr9I	CCCGGG	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	4 cut(s)	40, 68, 251, 488
CviJI	RGCY	6 cut(s)	18, 31, 197, 211, 387, 458
CviKI_1	RGCY	6 cut(s)	18, 31, 197, 211, 387, 458
CviQI	GTAC	1 cut(s)	338
DpnI	GATC	2 cut(s)	61, 180
DpnII	GATC	2 cut(s)	59, 178
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	29
Eco52I	CGGCCG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	43, 71, 254, 491
FaiI	YATR	9 cut(s)	41, 69, 124, 126, 239, 245, 247, 252, 489
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	4 cut(s)	39, 67, 250, 487
Fnu4HI	GCNGC	2 cut(s)	195, 198
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	195, 198
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	2 cut(s)	195, 198
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	18, 197
HapII	CCGG	3 cut(s)	32, 348, 459
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	43, 71, 254, 491
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	400, 484, 523
HpaII	CCGG	3 cut(s)	32, 348, 459
HphI	GGTGA	1 cut(s)	473
Hpy188I	TCNGA	3 cut(s)	399, 433, 528
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	306
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	2 cut(s)	254, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 299
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	43, 71, 254, 491
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	59, 178
LguI	GCTCTTC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	100, 392
LpnPI	CCDG	8 cut(s)	45, 71, 119, 138, 201, 303, 361, 472
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	2 cut(s)	61, 180
MboI	GATC	2 cut(s)	59, 178
MboII	GAAGA	3 cut(s)	38, 244, 422
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	2 cut(s)	500, 529
MlyI	GAGTC	2 cut(s)	493, 517
MnlI	CCTC	7 cut(s)	7, 29, 90, 141, 216, 428, 525
MseI	TTAA	2 cut(s)	363, 392
MslI	CAYNNNNRTG	1 cut(s)	307
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	3 cut(s)	32, 348, 459
MspR9I	CCNGG	2 cut(s)	348, 349
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	2 cut(s)	158, 299
NciI	CCSGG	2 cut(s)	348, 349
NdeII	GATC	2 cut(s)	59, 178
NlaIII	CATG	4 cut(s)	43, 71, 254, 491
NlaIV	GGNNCC	2 cut(s)	180, 388
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	81
NotI	GCGGCCGC	1 cut(s)	195
OliI	CACNNNNGTG	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	196, 199
PleI	GAGTC	2 cut(s)	492, 517
PpsI	GAGTC	2 cut(s)	492, 517
PspN4I	GGNNCC	2 cut(s)	180, 388
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	363, 392
SatI	GCNGC	2 cut(s)	195, 198
Sau3AI	GATC	2 cut(s)	59, 178
Sau96I	GGNCC	1 cut(s)	16
SchI	GAGTC	2 cut(s)	493, 517
ScrFI	CCNGG	2 cut(s)	348, 349
SetI	ASST	3 cut(s)	157, 336, 420
SfaNI	GCATC	1 cut(s)	424
SmaI	CCCGGG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	391, 404
SmoI	CTYRAG	2 cut(s)	391, 404
Sse9I	AATT	2 cut(s)	500, 529
SsiI	CCGC	3 cut(s)	8, 194, 198
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	346, 347
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	306
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	24, 168, 447
TasI	AATT	2 cut(s)	500, 529
TauI	GCSGC	2 cut(s)	197, 200
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	2 cut(s)	363, 392
Tru9I	TTAA	2 cut(s)	363, 392
TscAI	CASTG	3 cut(s)	90, 220, 309
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	347
TspRI	CASTG	3 cut(s)	90, 220, 309
Vha464I	CTTAAG	1 cut(s)	391
XapI	RAATTY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XmaI	CCCGGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.