Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003943

Physical Location & Seq

Genomic Coordinates Reverse (-)

39258164 .. 39259325

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAAGATATATTGGGACGCATCAAGTCAATCCAGCCAATTGAGGAAGTCACTATTGACGGAAGGCCTAAATCAAGACGCCACGTCTACATACAAAATACAAGAACCTGCAATTTGGTGTTATTGATCCTCAATTTTTTTATCATTTTAACTCTTTATCTGACTTATCATAAGACCTTTGTTACCATGAGCACATTCCCCTTCATCAATCCAGACATTCCCCACACTGCGGATTTTTCACAACCATTTCATGCTCCAAGAATTTTTACAAGTCCAACAAAACAAATAATAGGAGCTGATGAACTGGAGGCTGTAGAAAAAAGGACTGTAAAAGAACTCAACCTACTGGATCCAGAAACAGACAAGGAAACTACAGTTTTTTGTAGAGCTGAAATTACCAAGTTGATCACCCGAAATGGATGGTACTACGAAGCCTGCCCCATGTGCTACAAACAATTGAAGCAGACACCAAACGACAGCTTGCTCTCCTGTTCAAAGCACGGCTTCCGGATTGCACAGCCAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

DUF223 Helitron_like_N PIF1 REPA_OB_2 Rep_fac-A_C

Protein Analysis

176

Amino Acids

20.25

Weight (kDa)

8.26

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35240 FvH4_4g24650 FvH4_6g07961
rosa_chinensis	RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311
rosa_laevigata	RLG00000009282 RLG00000024808
rosa_roxburghii	Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630
rosa_rugosa	Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300
rosa_samantha	Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	3 cut(s)	121, 344, 357
AcsI	RAATTY	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	460, 495
AhdI	GACNNNNNGTC	1 cut(s)	83
AjiI	CACGTC	1 cut(s)	85
AluBI	AGCT	3 cut(s)	296, 389, 480
AluI	AGCT	3 cut(s)	296, 389, 480
Alw21I	GWGCWC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	121, 344, 357
Aor13HI	TCCGGA	1 cut(s)	507
AoxI	GGCC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	194
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	1 cut(s)	517
BclI	TGATCA	1 cut(s)	405
BfmI	CTRYAG	2 cut(s)	312, 372
BfuAI	ACCTGC	1 cut(s)	116
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	309, 351
BseAI	TCCGGA	1 cut(s)	507
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	309, 351
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	3 cut(s)	126, 349, 405
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	67
BspEI	TCCGGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	116
BspPI	GGATC	3 cut(s)	121, 344, 357
BsrI	ACTGG	2 cut(s)	309, 351
BssMI	GATC	3 cut(s)	126, 349, 405
BssNI	GRCGYC	1 cut(s)	79
Bst4CI	ACNGT	2 cut(s)	328, 376
BstACI	GRCGYC	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	436, 482
BstF5I	GGATG	1 cut(s)	425
BstKTI	GATC	3 cut(s)	129, 352, 408
BstMBI	GATC	3 cut(s)	126, 349, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstSFI	CTRYAG	2 cut(s)	312, 372
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	436, 482
CseI	GACGC	2 cut(s)	27, 87
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	187, 251, 442
CviJI	RGCY	9 cut(s)	37, 67, 296, 311, 389, 434, 480, 504, 520
CviKI_1	RGCY	9 cut(s)	37, 67, 296, 311, 389, 434, 480, 504, 520
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	3 cut(s)	128, 351, 407
DpnII	GATC	3 cut(s)	126, 349, 405
DriI	GACNNNNNGTC	1 cut(s)	83
Eam1105I	GACNNNNNGTC	1 cut(s)	83
Eco147I	AGGCCT	1 cut(s)	67
FaeI	CATG	3 cut(s)	190, 254, 445
FaiI	YATR	6 cut(s)	11, 92, 171, 188, 252, 443
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	186, 250, 441
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	508
HgaI	GACGC	2 cut(s)	27, 87
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	190, 254, 445
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	4 cut(s)	75, 212, 353, 508
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	57, 211
HpyCH4III	ACNGT	2 cut(s)	328, 376
HpyCH4IV	ACGT	2 cut(s)	84, 524
HpyCH4V	TGCA	2 cut(s)	111, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpySE526I	ACGT	2 cut(s)	84, 524
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	190, 254, 445
Kpn2I	TCCGGA	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	126, 349, 405
LmnI	GCTCC	2 cut(s)	259, 293
LpnPI	CCDG	9 cut(s)	47, 121, 225, 290, 332, 366, 448, 502, 521
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	2 cut(s)	84, 524
MaeIII	GTNAC	2 cut(s)	49, 181
MalI	GATC	3 cut(s)	128, 351, 407
MboI	GATC	3 cut(s)	126, 349, 405
MboII	GAAGA	1 cut(s)	17
MfeI	CAATTG	2 cut(s)	39, 455
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	6 cut(s)	39, 112, 133, 261, 393, 455
MmeI	TCCRAC	1 cut(s)	299
MnlI	CCTC	3 cut(s)	37, 140, 301
MroI	TCCGGA	1 cut(s)	507
MseI	TTAA	1 cut(s)	149
MspI	CCGG	1 cut(s)	508
MunI	CAATTG	2 cut(s)	39, 455
MwoI	GCNNNNNNNGC	1 cut(s)	444
NdeII	GATC	3 cut(s)	126, 349, 405
NlaIII	CATG	3 cut(s)	190, 254, 445
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	351
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	149
Sau3AI	GATC	3 cut(s)	126, 349, 405
SduI	GDGCHC	1 cut(s)	194
SetI	ASST	8 cut(s)	87, 110, 179, 298, 345, 391, 482, 527
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	2 cut(s)	312, 372
Sse9I	AATT	6 cut(s)	39, 112, 133, 261, 393, 455
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	328, 376
TaiI	ACGT	2 cut(s)	87, 527
TasI	AATT	6 cut(s)	39, 112, 133, 261, 393, 455
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	193, 239, 315
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.