Rh5BG244900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
29645621 .. 29654412
8792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG244900.1

Sequence Viewer

Length: 204 bp
ATGGCAAAGGCTGTAACTACGGGGAATATCCAGGCAAAATCTCCAAGGGACATTGAAACAGTTCCAACGCCTATAGATACAAGTCTGAAAGCAGACAAGCCGCAGCCTCAGTACCAACAGCAGAATCCTTCCTACATGCAGTCGCCGCCACCAATTCATCAAGTGCCTTACTCGCTCAAGATGTTCTGGAATGATGCAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.53

Weight (kDa)

8.06

Isoelectric Point (pI)

71.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 146
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 101, 104, 146
BlsI GCNGC 3 cut(s) 102, 105, 147
Bme1390I CCNGG 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 44
BseMII CTCAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 62
BspACI CCGC 2 cut(s) 101, 146
BspCNI CTCAG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 145, 172
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 136
CviJI RGCY 3 cut(s) 11, 100, 106
CviKI_1 RGCY 3 cut(s) 11, 100, 106
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 44
FaeI CATG 1 cut(s) 139
FaiI YATR 2 cut(s) 74, 137
FaqI GGGAC 1 cut(s) 62
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 101, 104, 146
Fsp4HI GCNGC 3 cut(s) 101, 104, 146
GluI GCNGC 3 cut(s) 101, 104, 146
Hin1II CATG 1 cut(s) 139
HinfI GANTC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 2 cut(s) 178, 187
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 139, 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 172
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 139
LpnPI CCDG 3 cut(s) 17, 44, 172
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 13
MluCI AATT 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 145, 172
NlaIII CATG 1 cut(s) 139
NspI RCATGY 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 3 cut(s) 102, 105, 147
Psp6I CCWGG 1 cut(s) 30
PspGI CCWGG 1 cut(s) 30
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 3 cut(s) 101, 104, 146
ScrFI CCNGG 1 cut(s) 32
SetI ASST 1 cut(s) 203
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 72
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 101, 146
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 61
TasI AATT 1 cut(s) 153
TauI GCSGC 2 cut(s) 103, 148
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 146
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.