Cytochrome c-type biogenesis ccda-like chloroplastic protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 220 |
| AccB1I | GGYRCC | 1 cut(s) | 51 |
| AclWI | GGATC | 1 cut(s) | 199 |
| AcyI | GRCGYC | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 182 |
| AgsI | TTSAA | 1 cut(s) | 143 |
| AluBI | AGCT | 1 cut(s) | 64 |
| AluI | AGCT | 1 cut(s) | 64 |
| Alw26I | GTCTC | 1 cut(s) | 64 |
| AlwI | GGATC | 1 cut(s) | 199 |
| ApeKI | GCWGC | 3 cut(s) | 61, 132, 170 |
| AspLEI | GCGC | 1 cut(s) | 54 |
| AxyI | CCTNAGG | 1 cut(s) | 84 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 164, 197 |
| BanI | GGYRCC | 1 cut(s) | 51 |
| BbvI | GCAGC | 3 cut(s) | 73, 144, 182 |
| BccI | CCATC | 1 cut(s) | 119 |
| BcoDI | GTCTC | 1 cut(s) | 64 |
| BfoI | RGCGCY | 1 cut(s) | 55 |
| BisI | GCNGC | 3 cut(s) | 62, 133, 171 |
| BlsI | GCNGC | 3 cut(s) | 63, 134, 172 |
| BmiI | GGNNCC | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 1 cut(s) | 196 |
| BsaHI | GRCGYC | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 110 |
| Bse21I | CCTNAGG | 1 cut(s) | 84 |
| Bse8I | GATNNNNATC | 1 cut(s) | 196 |
| BseGI | GGATG | 1 cut(s) | 94 |
| BseJI | GATNNNNATC | 1 cut(s) | 196 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseNI | ACTGG | 1 cut(s) | 110 |
| BseXI | GCAGC | 3 cut(s) | 73, 144, 182 |
| BshNI | GGYRCC | 1 cut(s) | 51 |
| BsmAI | GTCTC | 1 cut(s) | 64 |
| Bsp143I | GATC | 1 cut(s) | 191 |
| BspCNI | CTCAG | 1 cut(s) | 97 |
| BspLI | GGNNCC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 199 |
| BspT107I | GGYRCC | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 110 |
| BssMI | GATC | 1 cut(s) | 191 |
| BssNI | GRCGYC | 1 cut(s) | 52 |
| BstACI | GRCGYC | 1 cut(s) | 52 |
| BstDEI | CTNAG | 1 cut(s) | 84 |
| BstF5I | GGATG | 1 cut(s) | 94 |
| BstH2I | RGCGCY | 1 cut(s) | 55 |
| BstHHI | GCGC | 1 cut(s) | 54 |
| BstKTI | GATC | 1 cut(s) | 194 |
| BstMAI | GTCTC | 1 cut(s) | 64 |
| BstMBI | GATC | 1 cut(s) | 191 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 58, 113, 170 |
| BstV1I | GCAGC | 3 cut(s) | 73, 144, 182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 84 |
| BtsCI | GGATG | 1 cut(s) | 94 |
| BtsIMutI | CAGTG | 1 cut(s) | 117 |
| CfoI | GCGC | 1 cut(s) | 54 |
| Csp6I | GTAC | 1 cut(s) | 181 |
| CviAII | CATG | 1 cut(s) | 205 |
| CviJI | RGCY | 2 cut(s) | 17, 64 |
| CviKI_1 | RGCY | 2 cut(s) | 17, 64 |
| CviQI | GTAC | 1 cut(s) | 181 |
| DdeI | CTNAG | 1 cut(s) | 84 |
| DinI | GGCGCC | 1 cut(s) | 53 |
| DpnI | GATC | 1 cut(s) | 193 |
| DpnII | GATC | 1 cut(s) | 191 |
| DraI | TTTAAA | 1 cut(s) | 213 |
| Eco81I | CCTNAGG | 1 cut(s) | 84 |
| EgeI | GGCGCC | 1 cut(s) | 53 |
| EheI | GGCGCC | 1 cut(s) | 53 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 6 cut(s) | 11, 47, 49, 167, 206, 220 |
| FatI | CATG | 1 cut(s) | 204 |
| Fnu4HI | GCNGC | 3 cut(s) | 62, 133, 171 |
| FokI | GGATG | 1 cut(s) | 101 |
| Fsp4HI | GCNGC | 3 cut(s) | 62, 133, 171 |
| GlaI | GCGC | 1 cut(s) | 53 |
| GluI | GCNGC | 3 cut(s) | 62, 133, 171 |
| HaeII | RGCGCY | 1 cut(s) | 55 |
| HhaI | GCGC | 1 cut(s) | 54 |
| Hin1I | GRCGYC | 1 cut(s) | 52 |
| Hin1II | CATG | 1 cut(s) | 208 |
| Hin6I | GCGC | 1 cut(s) | 52 |
| HinP1I | GCGC | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 1 cut(s) | 86 |
| HpyCH4V | TGCA | 1 cut(s) | 107 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 58, 113, 170 |
| HpyF3I | CTNAG | 1 cut(s) | 84 |
| Hsp92I | GRCGYC | 1 cut(s) | 52 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| HspAI | GCGC | 1 cut(s) | 52 |
| KasI | GGCGCC | 1 cut(s) | 51 |
| Kzo9I | GATC | 1 cut(s) | 191 |
| LpnPI | CCDG | 4 cut(s) | 23, 68, 71, 123 |
| Lsp1109I | GCAGC | 3 cut(s) | 73, 144, 182 |
| MalI | GATC | 1 cut(s) | 193 |
| MboI | GATC | 1 cut(s) | 191 |
| MluCI | AATT | 2 cut(s) | 144, 186 |
| Mly113I | GGCGCC | 1 cut(s) | 52 |
| MnlI | CCTC | 1 cut(s) | 93 |
| MseI | TTAA | 2 cut(s) | 147, 212 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 58, 113, 170 |
| NarI | GGCGCC | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 191 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NlaIV | GGNNCC | 1 cut(s) | 53 |
| PkrI | GCNGC | 3 cut(s) | 63, 134, 172 |
| PluTI | GGCGCC | 1 cut(s) | 55 |
| PsiI | TTATAA | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 1 cut(s) | 53 |
| RsaI | GTAC | 1 cut(s) | 182 |
| RsaNI | GTAC | 1 cut(s) | 181 |
| SaqAI | TTAA | 2 cut(s) | 147, 212 |
| SatI | GCNGC | 3 cut(s) | 62, 133, 171 |
| Sau3AI | GATC | 1 cut(s) | 191 |
| SetI | ASST | 4 cut(s) | 42, 66, 85, 186 |
| SfoI | GGCGCC | 1 cut(s) | 53 |
| SgeI | CNNG | 7 cut(s) | 45, 50, 67, 98, 110, 122, 217 |
| Sse9I | AATT | 2 cut(s) | 144, 186 |
| SspDI | GGCGCC | 1 cut(s) | 51 |
| TasI | AATT | 2 cut(s) | 144, 186 |
| Tru1I | TTAA | 2 cut(s) | 147, 212 |
| Tru9I | TTAA | 2 cut(s) | 147, 212 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TseI | GCWGC | 3 cut(s) | 61, 132, 170 |
| TspRI | CASTG | 1 cut(s) | 117 |