Rh1AG252700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
46819358 .. 46823468
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG252700.1

Sequence Viewer

Length: 315 bp
ATGCCTGTTTTATATCATTGCAGTTTTTCTGAACCATTTCATGCTCCAAGAATTTTTATAAGTCCAATAAAACAAATAATAGGAGCTGATGGACTGGAGGCTGTAATAAAAAAAGACAGTCAAAGAACTCAACCTACTAGATCCAGAAACAAACAAAGTAATGTATCAATCAGCAAACTAATTGGGTGGATTTCTGCAAATCAAAGTGCACTGCGCGGTTTGTTTTTCCAATTGGTCTCAATTTCTGAACAATTTGAACTAATCCTCACCCATTTTGGCTTGGTCTTTCCCTTCCTATGTCATTGTTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.74

Weight (kDa)

9.3

Isoelectric Point (pI)

65.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 59
AccII CGCG 1 cut(s) 216
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 51
AgsI TTSAA 1 cut(s) 257
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 241
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 1 cut(s) 135
ApaLI GTGCAC 1 cut(s) 207
ApoI RAATTY 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 211
BccI CCATC 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 116
BsaI GGTCTC 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 211
BsmAI GTCTC 1 cut(s) 241
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 140
BspACI CCGC 1 cut(s) 216
BspFNI CGCG 1 cut(s) 216
BspPI GGATC 1 cut(s) 135
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 1 cut(s) 99
BssMI GATC 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 119
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 140
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
CfoI GCGC 1 cut(s) 216
CviAII CATG 1 cut(s) 41
CviJI RGCY 3 cut(s) 86, 101, 279
CviKI_1 RGCY 3 cut(s) 86, 101, 279
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 44
FaiI YATR 4 cut(s) 13, 42, 59, 298
FatI CATG 1 cut(s) 40
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 116
HhaI GCGC 1 cut(s) 216
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HphI GGTGA 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 31, 247
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 21, 197, 209
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 49, 83
LpnPI CCDG 3 cut(s) 18, 80, 157
MaeI CTAG 1 cut(s) 138
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MfeI CAATTG 1 cut(s) 230
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 5 cut(s) 51, 180, 230, 240, 251
MnlI CCTC 2 cut(s) 91, 275
MroXI GAANNNNTTC 1 cut(s) 36
MunI CAATTG 1 cut(s) 230
MvnI CGCG 1 cut(s) 216
NdeII GATC 1 cut(s) 140
NlaIII CATG 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 118, 150
PsuI RGATCY 1 cut(s) 140
Sau3AI GATC 1 cut(s) 140
SduI GDGCHC 1 cut(s) 211
SetI ASST 2 cut(s) 88, 136
SgeI CNNG 8 cut(s) 17, 53, 60, 107, 150, 156, 227, 292
Sse9I AATT 5 cut(s) 51, 180, 230, 240, 251
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 119
TasI AATT 5 cut(s) 51, 180, 230, 240, 251
TscAI CASTG 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 216
VneI GTGCAC 1 cut(s) 207
XapI RAATTY 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.