No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g35240 FvH4_4g24650 FvH4_6g07961 |
| rosa_chinensis | RchiOBHm_Chr5g0018421 RchiOBHm_Chr5g0035691 RchiOBHm_Chr6g0253311 |
| rosa_laevigata | RLG00000009282 RLG00000024808 |
| rosa_roxburghii | Rroxscaffold_1G00038440 Rroxscaffold_1G00044810 Rroxscaffold_1G00044930 Rroxscaffold_2G00155750 Rroxscaffold_3G00252240 Rroxscaffold_6G00408950 Rroxscaffold_6G00413390 Rroxscaffold_7G00174630 |
| rosa_rugosa | Rorug01G0185800.1 Rorug01G0241800 Rorug02G0382700 Rorug05G0151800 Rorug05G0329200 Rorug06G0052300 |
| rosa_samantha | Rh1AG252700 Rh1BG044700 Rh1CG091300 Rh2AG510700 Rh2DG310500 Rh5BG244900 Rh5BG245900 Rh5CG146100 Rh5CG276500 Rh5DG254400 Rh7AG208000 Rh7CG278600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 115 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 370 |
| AflIII | ACRYGT | 1 cut(s) | 113 |
| AgsI | TTSAA | 3 cut(s) | 35, 101, 167 |
| AjnI | CCWGG | 4 cut(s) | 75, 141, 273, 339 |
| Alw26I | GTCTC | 1 cut(s) | 227 |
| AoxI | GGCC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 4 cut(s) | 41, 107, 173, 305 |
| AsuC2I | CCSGG | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 1 cut(s) | 385 |
| AsuII | TTCGAA | 1 cut(s) | 6 |
| AvaII | GGWCC | 4 cut(s) | 41, 107, 173, 305 |
| BccI | CCATC | 1 cut(s) | 363 |
| BciT130I | CCWGG | 4 cut(s) | 77, 143, 275, 341 |
| BcnI | CCSGG | 1 cut(s) | 209 |
| BcoDI | GTCTC | 1 cut(s) | 227 |
| BfmI | CTRYAG | 3 cut(s) | 183, 249, 315 |
| Bme1390I | CCNGG | 5 cut(s) | 77, 143, 209, 275, 341 |
| Bme18I | GGWCC | 4 cut(s) | 41, 107, 173, 305 |
| BmgT120I | GGNCC | 4 cut(s) | 41, 107, 173, 305 |
| BmrFI | CCNGG | 5 cut(s) | 77, 143, 209, 275, 341 |
| Bpu14I | TTCGAA | 1 cut(s) | 6 |
| BpuMI | CCSGG | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 4 cut(s) | 23, 89, 274, 364 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 370 |
| BseBI | CCWGG | 4 cut(s) | 77, 143, 275, 341 |
| BseDI | CCNNGG | 4 cut(s) | 23, 89, 274, 364 |
| BseGI | GGATG | 1 cut(s) | 374 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 370 |
| Bsh1236I | CGCG | 1 cut(s) | 115 |
| BshFI | GGCC | 1 cut(s) | 380 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslFI | GGGAC | 4 cut(s) | 41, 107, 173, 291 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BsmAI | GTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 4 cut(s) | 41, 107, 173, 291 |
| BsnI | GGCC | 1 cut(s) | 380 |
| Bsp119I | TTCGAA | 1 cut(s) | 6 |
| BspANI | GGCC | 1 cut(s) | 380 |
| BspFNI | CGCG | 1 cut(s) | 115 |
| BspT104I | TTCGAA | 1 cut(s) | 6 |
| BssECI | CCNNGG | 4 cut(s) | 23, 89, 274, 364 |
| BssT1I | CCWWGG | 3 cut(s) | 23, 89, 364 |
| Bst2UI | CCWGG | 4 cut(s) | 77, 143, 275, 341 |
| Bst4CI | ACNGT | 1 cut(s) | 347 |
| BstBI | TTCGAA | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstF5I | GGATG | 1 cut(s) | 374 |
| BstFNI | CGCG | 1 cut(s) | 115 |
| BstMAI | GTCTC | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 386 |
| BstNI | CCWGG | 4 cut(s) | 77, 143, 275, 341 |
| BstSCI | CCNGG | 5 cut(s) | 75, 141, 207, 273, 339 |
| BstSFI | CTRYAG | 3 cut(s) | 183, 249, 315 |
| BstUI | CGCG | 1 cut(s) | 115 |
| BsuRI | GGCC | 1 cut(s) | 380 |
| BtsCI | GGATG | 1 cut(s) | 374 |
| Cfr13I | GGNCC | 4 cut(s) | 41, 107, 173, 305 |
| CviJI | RGCY | 1 cut(s) | 380 |
| CviKI_1 | RGCY | 1 cut(s) | 380 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| Eco130I | CCWWGG | 3 cut(s) | 23, 89, 364 |
| Eco147I | AGGCCT | 1 cut(s) | 380 |
| Eco47I | GGWCC | 4 cut(s) | 41, 107, 173, 305 |
| EcoRII | CCWGG | 4 cut(s) | 75, 141, 273, 339 |
| EcoT14I | CCWWGG | 3 cut(s) | 23, 89, 364 |
| ErhI | CCWWGG | 3 cut(s) | 23, 89, 364 |
| FaiI | YATR | 7 cut(s) | 55, 57, 230, 264, 296, 387, 403 |
| FaqI | GGGAC | 4 cut(s) | 41, 107, 173, 291 |
| FokI | GGATG | 1 cut(s) | 381 |
| HaeIII | GGCC | 1 cut(s) | 380 |
| HapII | CCGG | 1 cut(s) | 208 |
| HpaII | CCGG | 1 cut(s) | 208 |
| HphI | GGTGA | 1 cut(s) | 385 |
| Hpy166II | GTNNAC | 1 cut(s) | 350 |
| Hpy188I | TCNGA | 5 cut(s) | 66, 132, 198, 271, 330 |
| Hpy8I | GTNNAC | 1 cut(s) | 350 |
| HpyAV | CCTTC | 1 cut(s) | 370 |
| HpyCH4III | ACNGT | 1 cut(s) | 347 |
| HpyCH4V | TGCA | 1 cut(s) | 389 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 386 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| MboII | GAAGA | 2 cut(s) | 20, 23 |
| MluCI | AATT | 1 cut(s) | 390 |
| MluI | ACGCGT | 1 cut(s) | 113 |
| MmeI | TCCRAC | 4 cut(s) | 68, 134, 200, 332 |
| MnlI | CCTC | 1 cut(s) | 228 |
| MspI | CCGG | 1 cut(s) | 208 |
| MspR9I | CCNGG | 5 cut(s) | 77, 143, 209, 275, 341 |
| MvaI | CCWGG | 4 cut(s) | 77, 143, 275, 341 |
| MvnI | CGCG | 1 cut(s) | 115 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 386 |
| NciI | CCSGG | 1 cut(s) | 209 |
| NspV | TTCGAA | 1 cut(s) | 6 |
| PceI | AGGCCT | 1 cut(s) | 380 |
| Psp6I | CCWGG | 4 cut(s) | 75, 141, 273, 339 |
| PspGI | CCWGG | 4 cut(s) | 75, 141, 273, 339 |
| PspPI | GGNCC | 4 cut(s) | 41, 107, 173, 305 |
| Sau96I | GGNCC | 4 cut(s) | 41, 107, 173, 305 |
| ScrFI | CCNGG | 5 cut(s) | 77, 143, 209, 275, 341 |
| SetI | ASST | 7 cut(s) | 43, 52, 109, 175, 184, 220, 307 |
| SfcI | CTRYAG | 3 cut(s) | 183, 249, 315 |
| SfuI | TTCGAA | 1 cut(s) | 6 |
| SinI | GGWCC | 4 cut(s) | 41, 107, 173, 305 |
| Sse9I | AATT | 1 cut(s) | 390 |
| SseBI | AGGCCT | 1 cut(s) | 380 |
| StuI | AGGCCT | 1 cut(s) | 380 |
| StyD4I | CCNGG | 5 cut(s) | 75, 141, 207, 273, 339 |
| StyI | CCWWGG | 3 cut(s) | 23, 89, 364 |
| TaaI | ACNGT | 1 cut(s) | 347 |
| TaqI | TCGA | 1 cut(s) | 6 |
| TasI | AATT | 1 cut(s) | 390 |
| TspDTI | ATGAA | 1 cut(s) | 390 |
| VpaK11BI | GGWCC | 4 cut(s) | 41, 107, 173, 305 |