Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

31182902 .. 31185382

Gene Structure 2481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36370.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGTTCCAGGAGAACATCATTTTGGGAAATTTCATGAAGTTTTATTGGACCTACGTAGCCAGGTTGAGAATTTGCTCAATGAGCAGCAAAAAGCGCTGTTAAAATCTCATGAACAAAAGAAAGATTTAAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGGAGAGTGAGGCTCAAAACAAAGAGCTTAACAATATAATCTTAGACCAGCATACAGCCTTGGCAAGCTATGAAAATCAAATCAAGAATCTAAAGAAAGAACTGGATCAGGTACTAATTGAGGTTGGCTCTCAGGAGTTGAGGGGTGAAACTACGACCAATGAGTGTGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTTAGCATTAGCAAACTTGAATACCATTGGAGCAGAGCTAAAGGAGATGCAAAAAAACTTGGAATTAGGAAAGAAGGTCTGGCATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAAGCGAAAGAGGGTTGGGAAGCTGAGAAGATAGAACTGACTACAATTTTGACAAAAGAGCACCAGGACTCCACTTGGAAATACAACCAAGCTTTGAAGGAGCGAGACACAGCCTTGAATGATCAGAAAAATCTGCGAATACAGCTGAAAGAGGTTCAAAAAGACTTATACAAGTCCTGGGATGAGTTGGAATCAGGGAAGAAGGAGCTTTACACAGCTATGAACGAGCTGAGAATCTTGGAAGCAGAGCTAAATGAGGTTCGAGAGGACTTGTTCAAGTCCCGGGCTAAGTGGGAACTCGGCAAGAAGGTGCAGGAGGCTGAGAAGATCGAACTGACTAAGAGGCTTAACAAGTTCGGAACAGAGATAAAACAGATCAGAGAGGAGTTGTCTGACTTGGCCAAGATCCAGGAGAAGCACATTCAACAAAATGAGAACGCATATTGCGCAGGGTATCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGAGAAGCCATGAGGCAAAGGAAGTTACTGTCCAGGTTCATAAACCTCTGGAGGCCACATCTTCACTTTCTCATTCTCTTGCCTTAGTTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

375

Amino Acids

43.45

Weight (kDa)

6.13

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	961
AclWI	GGATC	2 cut(s)	297, 913
AcoI	YGGCCR	1 cut(s)	912
AcsI	RAATTY	2 cut(s)	29, 70
AfaI	GTAC	2 cut(s)	297, 371
AfeI	AGCGCT	1 cut(s)	96
AgsI	TTSAA	7 cut(s)	385, 415, 610, 631, 671, 790, 938
AjnI	CCWGG	6 cut(s)	7, 60, 576, 689, 921, 1041
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	576
Alw26I	GTCTC	2 cut(s)	387, 612
AlwI	GGATC	2 cut(s)	297, 913
Ama87I	CYCGRG	1 cut(s)	795
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	2 cut(s)	912, 1062
ApeKI	GCWGC	2 cut(s)	85, 388
ApoI	RAATTY	2 cut(s)	29, 70
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
AspLEI	GCGC	2 cut(s)	97, 962
AspS9I	GGNCC	2 cut(s)	49, 1118
AsuC2I	CCSGG	2 cut(s)	796, 797
AsuHPI	GGTGA	1 cut(s)	341
AvaI	CYCGRG	1 cut(s)	795
AvaII	GGWCC	2 cut(s)	49, 1118
BalI	TGGCCA	1 cut(s)	914
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	2 cut(s)	97, 400
BccI	CCATC	1 cut(s)	347
BciT130I	CCWGG	6 cut(s)	9, 62, 578, 691, 923, 1043
BclI	TGATCA	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	796, 797
BcoDI	GTCTC	2 cut(s)	387, 612
BfoI	RGCGCY	1 cut(s)	98
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	2 cut(s)	86, 389
BlsI	GCNGC	2 cut(s)	87, 390
Bme1390I	CCNGG	8 cut(s)	9, 62, 578, 691, 796, 797, 923, 1043
Bme18I	GGWCC	2 cut(s)	49, 1118
BmeT110I	CYCGRG	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	49, 1118
BmiI	GGNNCC	2 cut(s)	6, 990
BmrFI	CCNGG	8 cut(s)	9, 62, 578, 691, 796, 797, 923, 1043
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	984
BplI	GAGNNNNNCTC	4 cut(s)	181, 213, 296, 328
BpmI	CTGGAG	1 cut(s)	1079
BpuEI	CTTGAG	3 cut(s)	161, 191, 203
BpuMI	CCSGG	2 cut(s)	796, 797
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	243, 690, 795
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bse1I	ACTGG	2 cut(s)	291, 979
BseBI	CCWGG	6 cut(s)	9, 62, 578, 691, 923, 1043
BseDI	CCNNGG	3 cut(s)	243, 690, 795
BseGI	GGATG	1 cut(s)	700
BseMII	CTCAG	7 cut(s)	329, 474, 492, 528, 734, 825, 1001
BseNI	ACTGG	2 cut(s)	291, 979
BseRI	GAGGAG	2 cut(s)	200, 911
BseXI	GCAGC	2 cut(s)	97, 400
BsgI	GTGCAG	1 cut(s)	845
BshFI	GGCC	2 cut(s)	914, 1064
BsiHKAI	GWGCWC	1 cut(s)	576
BsiHKCI	CYCGRG	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	796
BslFI	GGGAC	1 cut(s)	778
BsmAI	GTCTC	2 cut(s)	387, 612
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	914, 1064
BsoBI	CYCGRG	1 cut(s)	795
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
BspANI	GGCC	2 cut(s)	914, 1064
BspCNI	CTCAG	7 cut(s)	328, 475, 493, 529, 735, 826, 1002
BspHI	TCATGA	3 cut(s)	34, 109, 994
BspLI	GGNNCC	2 cut(s)	6, 990
BspPI	GGATC	2 cut(s)	297, 913
BsrI	ACTGG	2 cut(s)	291, 979
BssECI	CCNNGG	3 cut(s)	243, 690, 795
BssMI	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	6 cut(s)	9, 62, 578, 691, 923, 1043
Bst4CI	ACNGT	1 cut(s)	1039
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	250, 480
BstF5I	GGATG	1 cut(s)	700
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	2 cut(s)	97, 962
BstKTI	GATC	6 cut(s)	169, 292, 637, 843, 891, 921
BstMAI	GTCTC	2 cut(s)	387, 612
BstMBI	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 94, 363, 655, 959
BstNI	CCWGG	6 cut(s)	9, 62, 578, 691, 923, 1043
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	8 cut(s)	7, 60, 576, 689, 794, 795, 921, 1041
BstSNI	TACGTA	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	97, 400
BstX2I	RGATCY	2 cut(s)	166, 918
BstYI	RGATCY	2 cut(s)	166, 918
BsuRI	GGCC	2 cut(s)	914, 1064
BtsCI	GGATG	1 cut(s)	700
Cac8I	GCNNGC	2 cut(s)	250, 480
CciI	TCATGA	3 cut(s)	34, 109, 994
CfoI	GCGC	2 cut(s)	97, 962
Cfr13I	GGNCC	2 cut(s)	49, 1118
Cfr9I	CCCGGG	1 cut(s)	795
Csp6I	GTAC	2 cut(s)	296, 370
CviAII	CATG	5 cut(s)	35, 110, 479, 995, 1019
CviQI	GTAC	2 cut(s)	296, 370
DpnI	GATC	6 cut(s)	168, 291, 636, 842, 890, 920
DpnII	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
EaeI	YGGCCR	1 cut(s)	912
Eco105I	TACGTA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	49, 1118
Eco47III	AGCGCT	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	795
EcoRII	CCWGG	6 cut(s)	7, 60, 576, 689, 921, 1041
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	38, 113, 482, 998, 1022
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	5 cut(s)	34, 109, 478, 994, 1018
FbaI	TGATCA	1 cut(s)	634
Fnu4HI	GCNGC	2 cut(s)	86, 389
FokI	GGATG	1 cut(s)	707
Fsp4HI	GCNGC	2 cut(s)	86, 389
FspI	TGCGCA	1 cut(s)	961
GlaI	GCGC	2 cut(s)	96, 961
GluI	GCNGC	2 cut(s)	86, 389
GsuI	CTGGAG	1 cut(s)	1079
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	914, 1064
HapII	CCGG	1 cut(s)	796
HhaI	GCGC	2 cut(s)	97, 962
Hin1II	CATG	5 cut(s)	38, 113, 482, 998, 1022
Hin6I	GCGC	2 cut(s)	95, 960
HinP1I	GCGC	2 cut(s)	95, 960
HindIII	AAGCTT	1 cut(s)	603
HinfI	GANTC	4 cut(s)	271, 581, 704, 747
HpaII	CCGG	1 cut(s)	796
HphI	GGTGA	1 cut(s)	341
Hpy188I	TCNGA	6 cut(s)	639, 872, 893, 907, 972, 1109
Hpy188III	TCNNGA	8 cut(s)	35, 110, 170, 268, 317, 776, 995, 1058
HpyAV	CCTTC	4 cut(s)	463, 604, 709, 814
HpyCH4III	ACNGT	1 cut(s)	1039
HpyCH4IV	ACGT	2 cut(s)	55, 1102
HpyCH4V	TGCA	2 cut(s)	445, 826
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 94, 363, 655, 959
HpySE526I	ACGT	2 cut(s)	55, 1102
Hsp92II	CATG	5 cut(s)	38, 113, 482, 998, 1022
HspAI	GCGC	2 cut(s)	95, 960
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
LmnI	GCTCC	4 cut(s)	425, 613, 718, 988
Lsp1109I	GCAGC	2 cut(s)	97, 400
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	2 cut(s)	55, 1102
MaeIII	GTNAC	1 cut(s)	1033
MalI	GATC	6 cut(s)	168, 291, 636, 842, 890, 920
MboI	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
MboII	GAAGA	4 cut(s)	553, 724, 850, 1062
MflI	RGATCY	2 cut(s)	166, 918
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	5 cut(s)	29, 70, 300, 458, 558
MluNI	TGGCCA	1 cut(s)	914
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	1 cut(s)	681
Mox20I	TGGCCA	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	4 cut(s)	101, 128, 213, 861
MslI	CAYNNNNRTG	1 cut(s)	731
Msp20I	TGGCCA	1 cut(s)	914
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	1 cut(s)	796
MspR9I	CCNGG	8 cut(s)	9, 62, 578, 691, 796, 797, 923, 1043
MvaI	CCWGG	6 cut(s)	9, 62, 578, 691, 923, 1043
MwoI	GCNNNNNNNGC	5 cut(s)	82, 94, 363, 655, 959
NciI	CCSGG	2 cut(s)	796, 797
NdeII	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
NlaIII	CATG	5 cut(s)	38, 113, 482, 998, 1022
NlaIV	GGNNCC	2 cut(s)	6, 990
NmeAIII	GCCGAG	1 cut(s)	792
NsbI	TGCGCA	1 cut(s)	961
NspI	RCATGY	1 cut(s)	482
PaeI	GCATGC	1 cut(s)	482
PagI	TCATGA	3 cut(s)	34, 109, 994
PfeI	GAWTC	3 cut(s)	271, 704, 747
PfoI	TCCNGGA	2 cut(s)	7, 921
PkrI	GCNGC	2 cut(s)	87, 390
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	56
Psp6I	CCWGG	6 cut(s)	7, 60, 576, 689, 921, 1041
PspGI	CCWGG	6 cut(s)	7, 60, 576, 689, 921, 1041
PspN4I	GGNNCC	2 cut(s)	6, 990
PspPI	GGNCC	2 cut(s)	49, 1118
PsuI	RGATCY	2 cut(s)	166, 918
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	2 cut(s)	297, 371
RsaNI	GTAC	2 cut(s)	296, 370
RseI	CAYNNNNRTG	1 cut(s)	731
SaqAI	TTAA	4 cut(s)	101, 128, 213, 861
SatI	GCNGC	2 cut(s)	86, 389
Sau3AI	GATC	6 cut(s)	166, 289, 634, 840, 888, 918
Sau96I	GGNCC	2 cut(s)	49, 1118
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	8 cut(s)	9, 62, 578, 691, 796, 797, 923, 1043
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	432
SinI	GGWCC	2 cut(s)	49, 1118
SmaI	CCCGGG	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	3 cut(s)	140, 170, 182
SmoI	CTYRAG	3 cut(s)	140, 170, 182
SnaBI	TACGTA	1 cut(s)	56
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	5 cut(s)	29, 70, 300, 458, 558
StyD4I	CCNGG	8 cut(s)	7, 60, 576, 689, 794, 795, 921, 1041
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	1039
TaiI	ACGT	2 cut(s)	58, 1105
TaqI	TCGA	3 cut(s)	157, 775, 843
TasI	AATT	5 cut(s)	29, 70, 300, 458, 558
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	3 cut(s)	271, 704, 747
Tru1I	TTAA	4 cut(s)	101, 128, 213, 861
Tru9I	TTAA	4 cut(s)	101, 128, 213, 861
TseI	GCWGC	2 cut(s)	85, 388
TspDTI	ATGAA	7 cut(s)	23, 51, 126, 270, 749, 1011, 1037
TspMI	CCCGGG	1 cut(s)	795
VpaK11BI	GGWCC	2 cut(s)	49, 1118
XapI	RAATTY	2 cut(s)	29, 70
XceI	RCATGY	1 cut(s)	482
XmaI	CCCGGG	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.