Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

72523049 .. 72526625

Gene Structure 3577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG455600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTTCCAGGAGAACTTCATCTTGGGAAATTGCATCAAGATTTACTGGACCTGCGCGGTCATTTTGAGAAGTTAGTCCTTGAGCTTCAAAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGATCTTGAGAAACAACTTGACGAGAGCGAAAATAAAAGGGAAGAGCTTAACAAGCTAGTCCTGGACTATGAAGGTAATATCAAGGATCTTAAGGATGATCTTGAGCAACGTGAAGCTCAAACAAAGGATCCTAAGAATAGTGTTGATCAGAGTGAAGATGGCATTAAGAAAGAACTTGATCAGGTTAGCTTTTATGAGTCGAGGATTGAAAATATGACCAAAGAGCGTGATGGCTTAATTAACAAGTTGAAAAGCGTTGGAGCAGAGCTAAAGGAAGCCCAAGAGGACTTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAAAAGCTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAAAGGAGCTCAGAGAGGAGTTGTCTGACTTGGAGAAGATCCACAAGCAGTACATTCAAGAAAATGAGAACGCATATTGCTCAGGGTACCTGACTGGTTGGTTCAAGGAGCCTCATGCCTACATTTCCCTGCCAAGCCATGGGGCCAAGGAAGTTACTCTTCTAGATCATGAACCTCTGGAGGCCACAGCAGACCAACCAAGACGAACACAAAGTTCAGACCTTGAAACATCCCATCTTTTGATTTTGCAAGAGCTCTCAACCAACTTTGTTGTTCTTGGTTTTTACTGTCCTCTCTGCAGGTTTGCAATGGTTCCCAGGTTTGCAATGGTTCCAGGGGAACTTCAATTTGGGAAATTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGACCTGAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGAAATGTGAGGCTCAAAATAAAGAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAATCTATGAAGATCAAATCAAAAATCTAAAGAAAGAACTGGATCAGATTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGCAATGACTTGATTAGCAAGTACAATTACAACCAAGTATTGAAGCAGCGAGACTCAACCTTAGGAAAGTTGAACACCATTGGAGCAGAGCTACAGGAAGCACAAAATGACTTGGAATTAGGCAAGAAGGTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTTCTAATGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

465

Amino Acids

53.96

Weight (kDa)

5.35

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	60, 843
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	5 cut(s)	216, 245, 258, 586, 1176
AcsI	RAATTY	1 cut(s)	908
AfaI	GTAC	4 cut(s)	605, 641, 954, 1238
AfiI	CCNNNNNNNGG	1 cut(s)	692
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	9 cut(s)	89, 332, 373, 611, 658, 779, 899, 1258, 1288
AjnI	CCWGG	5 cut(s)	7, 183, 869, 886, 939
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 885, 917
Alw21I	GWGCWC	2 cut(s)	564, 810
Alw26I	GTCTC	1 cut(s)	1260
AlwI	GGATC	5 cut(s)	216, 245, 258, 586, 1176
AoxI	GGCC	2 cut(s)	696, 735
ApeKI	GCWGC	2 cut(s)	964, 1261
ApoI	RAATTY	1 cut(s)	908
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	2 cut(s)	57, 1218
AspS9I	GGNCC	3 cut(s)	49, 696, 928
AvaII	GGWCC	2 cut(s)	49, 928
AxyI	CCTNAGG	1 cut(s)	1276
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	639
BanII	GRGCYC	2 cut(s)	564, 810
Bbv12I	GWGCWC	2 cut(s)	564, 810
BbvI	GCAGC	2 cut(s)	976, 1273
BccI	CCATC	4 cut(s)	275, 347, 496, 795
BciT130I	CCWGG	5 cut(s)	9, 185, 871, 888, 941
BclI	TGATCA	2 cut(s)	268, 301
BcoDI	GTCTC	1 cut(s)	1260
BfaI	CTAG	2 cut(s)	179, 716
BfmI	CTRYAG	2 cut(s)	850, 1307
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	2 cut(s)	60, 843
BglII	AGATCT	2 cut(s)	124, 1045
BisI	GCNGC	2 cut(s)	965, 1262
BlsI	GCNGC	2 cut(s)	966, 1263
Bme1390I	CCNGG	5 cut(s)	9, 185, 871, 888, 941
Bme18I	GGWCC	2 cut(s)	49, 928
BmgT120I	GGNCC	3 cut(s)	49, 696, 928
BmiI	GGNNCC	7 cut(s)	6, 252, 641, 663, 697, 867, 885
BmrFI	CCNGG	5 cut(s)	9, 185, 871, 888, 941
BmsI	GCATC	2 cut(s)	43, 1342
BpmI	CTGGAG	1 cut(s)	752
Bpu10I	CCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	8 cut(s)	93, 101, 149, 245, 972, 1040, 1070, 1082
BsaAI	YACGTR	1 cut(s)	935
BsaJI	CCNNGG	4 cut(s)	691, 699, 869, 887
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse1I	ACTGG	5 cut(s)	51, 459, 652, 930, 1170
Bse21I	CCTNAGG	1 cut(s)	1276
Bse3DI	GCAATG	3 cut(s)	867, 885, 1225
BseBI	CCWGG	5 cut(s)	9, 185, 871, 888, 941
BseDI	CCNNGG	4 cut(s)	691, 699, 869, 887
BseGI	GGATG	3 cut(s)	223, 782, 1357
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	3 cut(s)	867, 885, 1225
BseMII	CTCAG	7 cut(s)	450, 486, 577, 648, 998, 1347, 1365
BseNI	ACTGG	5 cut(s)	51, 459, 652, 930, 1170
BseRI	GAGGAG	2 cut(s)	584, 1207
BseXI	GCAGC	2 cut(s)	976, 1273
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	698, 737
BshNI	GGYRCC	1 cut(s)	639
BsiHKAI	GWGCWC	2 cut(s)	564, 810
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	1 cut(s)	1260
BsnI	GGCC	2 cut(s)	698, 737
Bsp1286I	GDGCHC	2 cut(s)	564, 810
Bsp19I	CCATGG	1 cut(s)	691
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	698, 737
BspCNI	CTCAG	7 cut(s)	451, 487, 576, 647, 999, 1348, 1366
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	2 cut(s)	721, 1183
BspLI	GGNNCC	7 cut(s)	6, 252, 641, 663, 697, 867, 885
BspMAI	CTGCAG	1 cut(s)	854
BspMI	ACCTGC	2 cut(s)	60, 843
BspPI	GGATC	5 cut(s)	216, 245, 258, 586, 1176
BspQI	GCTCTTC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	639
BspTI	CTTAAG	1 cut(s)	212
BsrDI	GCAATG	3 cut(s)	867, 885, 1225
BsrI	ACTGG	5 cut(s)	51, 459, 652, 930, 1170
BssECI	CCNNGG	4 cut(s)	691, 699, 869, 887
BssT1I	CCWWGG	2 cut(s)	691, 699
Bst2UI	CCWGG	5 cut(s)	9, 185, 871, 888, 941
Bst4CI	ACNGT	1 cut(s)	842
Bst6I	CTCTTC	2 cut(s)	159, 717
BstAFI	CTTAAG	1 cut(s)	212
BstBAI	YACGTR	1 cut(s)	935
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	3 cut(s)	223, 782, 1357
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	2 cut(s)	57, 1218
BstMAI	GTCTC	1 cut(s)	1260
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	5 cut(s)	9, 185, 871, 888, 941
BstSCI	CCNGG	5 cut(s)	7, 183, 869, 886, 939
BstSFI	CTRYAG	2 cut(s)	850, 1307
BstSNI	TACGTA	1 cut(s)	935
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	976, 1273
BstX2I	RGATCY	5 cut(s)	124, 208, 250, 591, 1045
BstYI	RGATCY	5 cut(s)	124, 208, 250, 591, 1045
Bsu36I	CCTNAGG	1 cut(s)	1276
BsuRI	GGCC	2 cut(s)	698, 737
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	3 cut(s)	223, 782, 1357
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	2 cut(s)	60, 843
CciI	TCATGA	2 cut(s)	721, 1183
CfoI	GCGC	2 cut(s)	57, 1218
Cfr13I	GGNCC	3 cut(s)	49, 696, 928
Csp6I	GTAC	4 cut(s)	604, 640, 953, 1237
CviAII	CATG	5 cut(s)	527, 668, 692, 722, 1184
CviQI	GTAC	4 cut(s)	604, 640, 953, 1237
Eam1104I	CTCTTC	2 cut(s)	159, 717
EarI	CTCTTC	2 cut(s)	159, 717
Ecl136II	GAGCTC	2 cut(s)	562, 808
Eco105I	TACGTA	1 cut(s)	935
Eco130I	CCWWGG	2 cut(s)	691, 699
Eco24I	GRGCYC	2 cut(s)	564, 810
Eco47I	GGWCC	2 cut(s)	49, 928
Eco53kI	GAGCTC	2 cut(s)	562, 808
Eco81I	CCTNAGG	1 cut(s)	1276
EcoICRI	GAGCTC	2 cut(s)	562, 808
EcoRII	CCWGG	5 cut(s)	7, 183, 869, 886, 939
EcoT14I	CCWWGG	2 cut(s)	691, 699
EcoT38I	GRGCYC	2 cut(s)	564, 810
ErhI	CCWWGG	2 cut(s)	691, 699
FaeI	CATG	5 cut(s)	530, 671, 695, 725, 1187
FalI	AAGNNNNNCTT	2 cut(s)	696, 728
FatI	CATG	5 cut(s)	526, 667, 691, 721, 1183
FbaI	TGATCA	2 cut(s)	268, 301
Fnu4HI	GCNGC	2 cut(s)	965, 1262
FokI	GGATG	3 cut(s)	230, 769, 1364
FriOI	GRGCYC	2 cut(s)	564, 810
Fsp4HI	GCNGC	2 cut(s)	965, 1262
FspBI	CTAG	2 cut(s)	179, 716
GlaI	GCGC	2 cut(s)	56, 1217
GluI	GCNGC	2 cut(s)	965, 1262
GsuI	CTGGAG	1 cut(s)	752
HaeIII	GGCC	2 cut(s)	698, 737
HhaI	GCGC	2 cut(s)	57, 1218
Hin1II	CATG	5 cut(s)	530, 671, 695, 725, 1187
Hin6I	GCGC	2 cut(s)	55, 1216
HinP1I	GCGC	2 cut(s)	55, 1216
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	320, 1187, 1268
Hpy188I	TCNGA	5 cut(s)	273, 566, 580, 772, 1173
HpyAV	CCTTC	4 cut(s)	188, 421, 943, 1336
HpyCH4III	ACNGT	1 cut(s)	842
HpyCH4IV	ACGT	2 cut(s)	232, 934
HpyCH4V	TGCA	7 cut(s)	34, 476, 802, 852, 860, 878, 1391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpySE526I	ACGT	2 cut(s)	232, 934
Hsp92II	CATG	5 cut(s)	530, 671, 695, 725, 1187
HspAI	GCGC	2 cut(s)	55, 1216
KpnI	GGTACC	1 cut(s)	643
Ksp22I	TGATCA	2 cut(s)	268, 301
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	383, 559, 661, 1298
Lsp1109I	GCAGC	2 cut(s)	976, 1273
LweI	GCATC	2 cut(s)	43, 1342
MaeI	CTAG	2 cut(s)	179, 716
MaeII	ACGT	2 cut(s)	232, 934
MaeIII	GTNAC	1 cut(s)	706
MboII	GAAGA	6 cut(s)	176, 290, 511, 601, 704, 1148
MflI	RGATCY	5 cut(s)	124, 208, 250, 591, 1045
MhlI	GDGCHC	2 cut(s)	564, 810
MluCI	AATT	8 cut(s)	29, 360, 416, 899, 908, 1200, 1240, 1331
MlyI	GAGTC	3 cut(s)	329, 1196, 1262
MmeI	TCCRAC	1 cut(s)	361
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	5 cut(s)	9, 185, 871, 888, 941
MvaI	CCWGG	5 cut(s)	9, 185, 871, 888, 941
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	691
NlaIII	CATG	5 cut(s)	530, 671, 695, 725, 1187
NlaIV	GGNNCC	7 cut(s)	6, 252, 641, 663, 697, 867, 885
PacI	TTAATTAA	1 cut(s)	363
PagI	TCATGA	2 cut(s)	721, 1183
PciSI	GCTCTTC	1 cut(s)	159
PflMI	CCANNNNNTGG	1 cut(s)	692
PfoI	TCCNGGA	2 cut(s)	7, 183
PkrI	GCNGC	2 cut(s)	966, 1263
PleI	GAGTC	3 cut(s)	328, 1195, 1262
PpsI	GAGTC	3 cut(s)	328, 1195, 1262
Ppu21I	YACGTR	1 cut(s)	935
Psp124BI	GAGCTC	2 cut(s)	564, 810
Psp6I	CCWGG	5 cut(s)	7, 183, 869, 886, 939
PspGI	CCWGG	5 cut(s)	7, 183, 869, 886, 939
PspN4I	GGNNCC	7 cut(s)	6, 252, 641, 663, 697, 867, 885
PspPI	GGNCC	3 cut(s)	49, 696, 928
PstI	CTGCAG	1 cut(s)	854
PsuI	RGATCY	5 cut(s)	124, 208, 250, 591, 1045
RsaI	GTAC	4 cut(s)	605, 641, 954, 1238
RsaNI	GTAC	4 cut(s)	604, 640, 953, 1237
SacI	GAGCTC	2 cut(s)	564, 810
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	2 cut(s)	965, 1262
Sau96I	GGNCC	3 cut(s)	49, 696, 928
SchI	GAGTC	3 cut(s)	329, 1196, 1262
ScrFI	CCNGG	5 cut(s)	9, 185, 871, 888, 941
SduI	GDGCHC	2 cut(s)	564, 810
SfaNI	GCATC	2 cut(s)	43, 1342
SfcI	CTRYAG	2 cut(s)	850, 1307
SinI	GGWCC	2 cut(s)	49, 928
SmlI	CTYRAG	9 cut(s)	80, 108, 128, 212, 224, 987, 1019, 1049, 1061
SmoI	CTYRAG	9 cut(s)	80, 108, 128, 212, 224, 987, 1019, 1049, 1061
SnaBI	TACGTA	1 cut(s)	935
Sse9I	AATT	8 cut(s)	29, 360, 416, 899, 908, 1200, 1240, 1331
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	179, 716
SstI	GAGCTC	2 cut(s)	564, 810
StyD4I	CCNGG	5 cut(s)	7, 183, 869, 886, 939
StyI	CCWWGG	2 cut(s)	691, 699
TaaI	ACNGT	1 cut(s)	842
TaiI	ACGT	2 cut(s)	235, 937
TaqI	TCGA	3 cut(s)	323, 1036, 1190
TasI	AATT	8 cut(s)	29, 360, 416, 899, 908, 1200, 1240, 1331
TatI	WGTACW	2 cut(s)	603, 1236
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	2 cut(s)	964, 1261
TspDTI	ATGAA	5 cut(s)	8, 207, 738, 902, 1149
TspRI	CASTG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	2 cut(s)	49, 928
XapI	RAATTY	1 cut(s)	908
XbaI	TCTAGA	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	877
XspI	CTAG	2 cut(s)	179, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.