Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

73609105 .. 73613607

Gene Structure 4503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG427900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGTTCCAGGAGAACTTCATCTTGGGAAATTGCATCAAGATTTACTGGACCTGCGCGGTCATTTTGAGAAGTTAGTCCTTGAGCTTCAAAAAACTCTGTTAAAATCTCAAGAGCAAAAGAAAGATCTTGAGAAACAACTTGAGGAGAGCGAAAACAAAAGGGAAGAGCTTAACAAGCTAGTCCTGGACTATGAAGGTAATATCAAGGATCTTAAGGATGATCTTGAGCAACGTGAAGCTCAAACAAAGGATCCTAAGAATAGTGTTGATCAGAGTGAAGATGGCATTAAGAAAGAACTTGATCAGGTTAGCTTTTATAAGTCGAGGATTGAAAAAGAGCGTGATGGCTTAATTAACAAGTTGAAAAGCGTTGGAGCAGAGCTAAAGGAAGCCCAAGAGGACTTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGCAGGTGTGGGAGGCTGAGAAGATAGCACTGACGAATGAAATTCTCGCAAAAGAATGCCAGGACTCCACTTGCAAATACAACCAAGCTTTGAAGGAGCGAGACGCAGCCTTGAGTGATCTGAATAACCTGGGAGTAGAGCTAGAGGAGGTTCGAAAGGACTTGTCCGAGTCCCAGGCTAACTTGGAATTAGGCAAGAAGGTTTGGCAGGCTGAGAGCATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAGGATGGAACTGACTAAAAAGCTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAAAGGAGCTCAGAGAGGAGTTGTCTGACTTGGAGAAGATCCACAAGCAGTACATTCAAGAAAATGAGAACGCATATTGCTCAGGGTACCTGACTGGTTGGTTCAAGGAGCCTCATGCCTACATTTCCCTGCCAAGCCATGAGGCCAAGGAAGTTACTCTTCTAGATCATGAACCTCTGGAGGCCACGTCTCCACTCTCTCACACTAGTGCCTTAATTAAACTTTTCGGAAGTGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

39.68

Weight (kDa)

5.03

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AarI	CACCTGC	1 cut(s)	463
Acc36I	ACCTGC	2 cut(s)	60, 463
Acc65I	GGTACC	1 cut(s)	879
AccB1I	GGYRCC	1 cut(s)	879
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	57
AclWI	GGATC	5 cut(s)	216, 245, 258, 826, 1025
AcsI	RAATTY	1 cut(s)	510
AfaI	GTAC	2 cut(s)	845, 881
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	6 cut(s)	89, 332, 364, 562, 851, 898
AhlI	ACTAGT	1 cut(s)	998
AjiI	CACGTC	1 cut(s)	981
AjnI	CCWGG	5 cut(s)	7, 183, 528, 597, 642
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	999
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	2 cut(s)	564, 987
AlwI	GGATC	5 cut(s)	216, 245, 258, 826, 1025
AoxI	GGCC	2 cut(s)	936, 975
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	510
Asp718I	GGTACC	1 cut(s)	879
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	879
BanII	GRGCYC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	3 cut(s)	275, 338, 736
BciT130I	CCWGG	5 cut(s)	9, 185, 530, 599, 644
BclI	TGATCA	2 cut(s)	268, 301
BcoDI	GTCTC	2 cut(s)	564, 987
BcuI	ACTAGT	1 cut(s)	998
BfaI	CTAG	4 cut(s)	179, 611, 956, 999
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	2 cut(s)	60, 463
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	576
BlsI	GCNGC	1 cut(s)	577
Bme1390I	CCNGG	5 cut(s)	9, 185, 530, 599, 644
Bme18I	GGWCC	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	981
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	6, 252, 881, 903
BmrFI	CCNGG	5 cut(s)	9, 185, 530, 599, 644
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	992
Bpu10I	CCTNAGC	1 cut(s)	874
Bpu14I	TTCGAA	1 cut(s)	622
BpuEI	CTTGAG	6 cut(s)	93, 101, 149, 161, 245, 601
BsaJI	CCNNGG	3 cut(s)	598, 642, 939
BsaXI	ACNNNNNCTCC	2 cut(s)	965, 995
Bse1I	ACTGG	4 cut(s)	51, 450, 699, 892
BseBI	CCWGG	5 cut(s)	9, 185, 530, 599, 644
BseDI	CCNNGG	3 cut(s)	598, 642, 939
BseGI	GGATG	2 cut(s)	223, 747
BseMII	CTCAG	7 cut(s)	441, 477, 672, 690, 726, 817, 888
BseNI	ACTGG	4 cut(s)	51, 450, 699, 892
BseRI	GAGGAG	3 cut(s)	158, 629, 824
BseXI	GCAGC	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	938, 977
BshNI	GGYRCC	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	804
BslFI	GGGAC	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	564, 987
BsmBI	CGTCTC	2 cut(s)	564, 987
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	938, 977
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	804
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	2 cut(s)	938, 977
BspCNI	CTCAG	7 cut(s)	442, 478, 673, 691, 727, 816, 887
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	4 cut(s)	6, 252, 881, 903
BspMI	ACCTGC	2 cut(s)	60, 463
BspPI	GGATC	5 cut(s)	216, 245, 258, 826, 1025
BspQI	GCTCTTC	1 cut(s)	159
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	879
BspTI	CTTAAG	1 cut(s)	212
BsrI	ACTGG	4 cut(s)	51, 450, 699, 892
BssECI	CCNNGG	3 cut(s)	598, 642, 939
BssT1I	CCWWGG	1 cut(s)	939
Bst2UI	CCWGG	5 cut(s)	9, 185, 530, 599, 644
Bst6I	CTCTTC	2 cut(s)	159, 957
BstAFI	CTTAAG	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	678
BstDEI	CTNAG	8 cut(s)	255, 450, 486, 681, 699, 735, 803, 874
BstF5I	GGATG	2 cut(s)	223, 747
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	564, 987
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	5 cut(s)	9, 185, 530, 599, 644
BstSCI	CCNGG	5 cut(s)	7, 183, 528, 597, 642
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	587
BstX2I	RGATCY	4 cut(s)	124, 208, 250, 831
BstYI	RGATCY	4 cut(s)	124, 208, 250, 831
BsuRI	GGCC	2 cut(s)	938, 977
BtrI	CACGTC	1 cut(s)	981
BtsCI	GGATG	2 cut(s)	223, 747
BtsIMutI	CAGTG	3 cut(s)	443, 497, 692
BveI	ACCTGC	2 cut(s)	60, 463
Cac8I	GCNNGC	1 cut(s)	678
CciI	TCATGA	1 cut(s)	961
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	844, 880
CviAII	CATG	4 cut(s)	767, 908, 932, 962
CviQI	GTAC	2 cut(s)	844, 880
DdeI	CTNAG	8 cut(s)	255, 450, 486, 681, 699, 735, 803, 874
Eam1104I	CTCTTC	2 cut(s)	159, 957
EarI	CTCTTC	2 cut(s)	159, 957
Ecl136II	GAGCTC	1 cut(s)	802
Eco130I	CCWWGG	1 cut(s)	939
Eco24I	GRGCYC	1 cut(s)	804
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	802
EcoRII	CCWGG	5 cut(s)	7, 183, 528, 597, 642
EcoT14I	CCWWGG	1 cut(s)	939
EcoT38I	GRGCYC	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	939
Esp3I	CGTCTC	2 cut(s)	564, 987
FaeI	CATG	4 cut(s)	770, 911, 935, 965
FaiI	YATR	9 cut(s)	192, 318, 689, 768, 868, 909, 933, 963, 1036
FalI	AAGNNNNNCTT	2 cut(s)	936, 968
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	4 cut(s)	766, 907, 931, 961
FbaI	TGATCA	2 cut(s)	268, 301
Fnu4HI	GCNGC	1 cut(s)	576
FokI	GGATG	2 cut(s)	230, 754
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	1 cut(s)	576
FspBI	CTAG	4 cut(s)	179, 611, 956, 999
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	576
GsuI	CTGGAG	1 cut(s)	992
HaeIII	GGCC	2 cut(s)	938, 977
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	770, 911, 935, 965
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	555, 758
HinfI	GANTC	2 cut(s)	533, 638
Hpy188I	TCNGA	6 cut(s)	273, 591, 637, 806, 820, 1022
Hpy188III	TCNNGA	8 cut(s)	38, 110, 128, 224, 851, 956, 962, 971
HpyAV	CCTTC	4 cut(s)	188, 412, 556, 661
HpyCH4IV	ACGT	2 cut(s)	232, 980
HpyCH4V	TGCA	4 cut(s)	34, 467, 543, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	8 cut(s)	255, 450, 486, 681, 699, 735, 803, 874
HpySE526I	ACGT	2 cut(s)	232, 980
Hsp92II	CATG	4 cut(s)	770, 911, 935, 965
HspAI	GCGC	1 cut(s)	55
KpnI	GGTACC	1 cut(s)	883
Ksp22I	TGATCA	2 cut(s)	268, 301
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	4 cut(s)	374, 565, 799, 901
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	4 cut(s)	179, 611, 956, 999
MaeII	ACGT	2 cut(s)	232, 980
MaeIII	GTNAC	1 cut(s)	946
MboII	GAAGA	5 cut(s)	176, 290, 502, 841, 944
MflI	RGATCY	4 cut(s)	124, 208, 250, 831
MhlI	GDGCHC	1 cut(s)	804
MluCI	AATT	6 cut(s)	29, 351, 407, 510, 656, 1008
MlyI	GAGTC	2 cut(s)	527, 647
MmeI	TCCRAC	1 cut(s)	352
MslI	CAYNNNNRTG	1 cut(s)	999
MspCI	CTTAAG	1 cut(s)	212
MspR9I	CCNGG	5 cut(s)	9, 185, 530, 599, 644
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	5 cut(s)	9, 185, 530, 599, 644
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	175
NlaIII	CATG	4 cut(s)	770, 911, 935, 965
NlaIV	GGNNCC	4 cut(s)	6, 252, 881, 903
NspV	TTCGAA	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	999
PacI	TTAATTAA	2 cut(s)	354, 1011
PagI	TCATGA	1 cut(s)	961
PaqCI	CACCTGC	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	530
PfoI	TCCNGGA	2 cut(s)	7, 183
PkrI	GCNGC	1 cut(s)	577
PleI	GAGTC	2 cut(s)	527, 646
PpsI	GAGTC	2 cut(s)	527, 646
PsiI	TTATAA	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	804
Psp6I	CCWGG	5 cut(s)	7, 183, 528, 597, 642
PspGI	CCWGG	5 cut(s)	7, 183, 528, 597, 642
PspN4I	GGNNCC	4 cut(s)	6, 252, 881, 903
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	4 cut(s)	124, 208, 250, 831
RsaI	GTAC	2 cut(s)	845, 881
RsaNI	GTAC	2 cut(s)	844, 880
RseI	CAYNNNNRTG	1 cut(s)	999
SacI	GAGCTC	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	159
SatI	GCNGC	1 cut(s)	576
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	2 cut(s)	527, 647
ScrFI	CCNGG	5 cut(s)	9, 185, 530, 599, 644
SduI	GDGCHC	1 cut(s)	804
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	999
SmlI	CTYRAG	7 cut(s)	80, 108, 128, 140, 212, 224, 580
SmoI	CTYRAG	7 cut(s)	80, 108, 128, 140, 212, 224, 580
SpeI	ACTAGT	1 cut(s)	998
Sse9I	AATT	6 cut(s)	29, 351, 407, 510, 656, 1008
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	4 cut(s)	179, 611, 956, 999
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	5 cut(s)	7, 183, 528, 597, 642
StyI	CCWWGG	1 cut(s)	939
TaiI	ACGT	2 cut(s)	235, 983
TaqI	TCGA	2 cut(s)	323, 622
TasI	AATT	6 cut(s)	29, 351, 407, 510, 656, 1008
TatI	WGTACW	1 cut(s)	843
TscAI	CASTG	3 cut(s)	450, 504, 699
TseI	GCWGC	1 cut(s)	575
TspDTI	ATGAA	4 cut(s)	8, 207, 522, 978
TspRI	CASTG	3 cut(s)	450, 504, 699
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	955
XspI	CTAG	4 cut(s)	179, 611, 956, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.