Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

71316280 .. 71318316

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035765

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGTTCCAGCAGGAGAACTTCAATTTGGCAATTTTCATCAAGTTTTACTGAGCCTACGTAGCCAGGTTGAGAAGATACTCAATGAGGAGCAGAAAGCTCTGTTAGAATCTCTAGAGCAAAAGGAAGACCTAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAACAAAGATCTTGAGAAAGAACTTGAGAAGAGTGAGGCTCAAAATAAAGAGCTTCACAATATAGTCTTAGACCAGCATACAGCCTTGTCAAGCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTTGATCAGGTTGGCTCTCATGAGTCAAGGAGTGAAATTATGACCAAAGAGCGCGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCTTAGAGAAGTTGAATACCATTGGAGCAGAGCTAAAGGATGCGCAAAAAGACCTGGAAATGTGCAAGAATGTCTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAGGCGAAAAAGGCGTGGGAGGCTGAGAGGATGGCACTGACAAGTACAATTTTGACGCACCAGGACTCCACTTGGAAATGCAACCAAGCTTTAAAGGAGCGAGACTCGGCCTTGAAGGAGGTCCAAAAAGATTTGTCCAAGTCCCGGGTTGAGTTGGAATCAGGAAAGAAGGACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGGTTCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTAGGCAAGAAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAGAAGCTTAGCAAGTTTGGAACAGGAAACTCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGAAGCACATTAAAGAAAATGAGAATGCATATTGTACAGGGTACCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGCGAAGCTATGAGGCCAAGGAGCGCTGCTGCGGACCCTCTGGCTATGCTTGCTCCGCCCCTGCCGAGGAGGATACTGCTGTAGATCAGGAGCAAAATGCTGTGGACACACGCCCCTGGAGGCTAAATCTCTATGATGTTTGTAATATCATTGTAATCACATTTGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

380

Amino Acids

43.55

Weight (kDa)

5.55

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	435
Acc65I	GGTACC	1 cut(s)	924
AccB1I	GGYRCC	1 cut(s)	924
AccII	CGCG	1 cut(s)	342
AciI	CCGC	2 cut(s)	999, 1023
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	1 cut(s)	870
AfaI	GTAC	4 cut(s)	362, 550, 919, 926
AfeI	AGCGCT	1 cut(s)	992
AfiI	CCNNNNNNNGG	3 cut(s)	648, 753, 1033
AgsI	TTSAA	4 cut(s)	23, 376, 406, 619
AjnI	CCWGG	4 cut(s)	63, 444, 564, 1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
Alw26I	GTCTC	2 cut(s)	378, 600
AlwI	GGATC	1 cut(s)	871
Ama87I	CYCGRG	2 cut(s)	648, 753
Aor51HI	AGCGCT	1 cut(s)	992
AoxI	GGCC	3 cut(s)	612, 870, 981
ApeKI	GCWGC	3 cut(s)	379, 993, 996
Asp718I	GGTACC	1 cut(s)	924
AspLEI	GCGC	3 cut(s)	342, 436, 993
AspS9I	GGNCC	3 cut(s)	625, 676, 1001
AsuC2I	CCSGG	4 cut(s)	649, 650, 754, 755
AsuII	TTCGAA	1 cut(s)	733
AvaI	CYCGRG	2 cut(s)	648, 753
AvaII	GGWCC	3 cut(s)	625, 676, 1001
BaeI	ACNNNNGTAYC	2 cut(s)	1032, 1065
BalI	TGGCCA	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	924
BauI	CACGAG	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	391, 980, 983
BccI	CCATC	3 cut(s)	338, 529, 793
BciT130I	CCWGG	4 cut(s)	65, 446, 566, 1084
BciVI	GTATCC	1 cut(s)	1033
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	4 cut(s)	649, 650, 754, 755
BcoDI	GTCTC	2 cut(s)	378, 600
BfaI	CTAG	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	1047
BfoI	RGCGCY	1 cut(s)	994
BfuI	GTATCC	1 cut(s)	1033
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	3 cut(s)	380, 994, 997
BlpI	GCTNAGC	1 cut(s)	818
BlsI	GCNGC	3 cut(s)	381, 995, 998
Bme1390I	CCNGG	8 cut(s)	65, 446, 566, 649, 650, 754, 755, 1084
Bme18I	GGWCC	3 cut(s)	625, 676, 1001
BmeT110I	CYCGRG	2 cut(s)	648, 753
BmgT120I	GGNCC	3 cut(s)	625, 676, 1001
BmiI	GGNNCC	4 cut(s)	6, 926, 948, 1003
BmrFI	CCNGG	8 cut(s)	65, 446, 566, 649, 650, 754, 755, 1084
BmrI	ACTGGG	1 cut(s)	942
BmsI	GCATC	2 cut(s)	421, 460
BmuI	ACTGGG	1 cut(s)	942
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	4 cut(s)	184, 216, 593, 625
BpmI	CTGGAG	1 cut(s)	1105
Bpu1102I	GCTNAGC	1 cut(s)	818
Bpu14I	TTCGAA	1 cut(s)	733
BpuEI	CTTGAG	3 cut(s)	164, 194, 206
BpuMI	CCSGG	4 cut(s)	649, 650, 754, 755
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	5 cut(s)	648, 753, 984, 1032, 1082
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	648, 753, 1033
Bse1I	ACTGG	1 cut(s)	937
BseBI	CCWGG	4 cut(s)	65, 446, 566, 1084
BseDI	CCNNGG	5 cut(s)	648, 753, 984, 1032, 1082
BseGI	GGATG	3 cut(s)	436, 475, 540
BseLI	CCNNNNNNNGG	3 cut(s)	648, 753, 1033
BseMII	CTCAG	7 cut(s)	41, 402, 465, 483, 519, 783, 862
BseNI	ACTGG	1 cut(s)	937
BseRI	GAGGAG	3 cut(s)	101, 869, 1049
BseXI	GCAGC	3 cut(s)	391, 980, 983
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	3 cut(s)	614, 872, 983
BshNI	GGYRCC	1 cut(s)	924
BsiHKCI	CYCGRG	2 cut(s)	648, 753
BsiSI	CCGG	2 cut(s)	649, 754
BslFI	GGGAC	2 cut(s)	631, 736
BslI	CCNNNNNNNGG	3 cut(s)	648, 753, 1033
BsmAI	GTCTC	2 cut(s)	378, 600
BsmFI	GGGAC	2 cut(s)	631, 736
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	3 cut(s)	614, 872, 983
BsoBI	CYCGRG	2 cut(s)	648, 753
Bsp119I	TTCGAA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	917
Bsp143I	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
Bsp1720I	GCTNAGC	1 cut(s)	818
BspACI	CCGC	2 cut(s)	999, 1023
BspANI	GGCC	3 cut(s)	614, 872, 983
BspCNI	CTCAG	7 cut(s)	42, 401, 466, 484, 520, 784, 861
BspFNI	CGCG	1 cut(s)	342
BspHI	TCATGA	2 cut(s)	307, 952
BspLI	GGNNCC	4 cut(s)	6, 926, 948, 1003
BspPI	GGATC	1 cut(s)	871
BspT104I	TTCGAA	1 cut(s)	733
BspT107I	GGYRCC	1 cut(s)	924
BsrGI	TGTACA	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	937
BssECI	CCNNGG	5 cut(s)	648, 753, 984, 1032, 1082
BssMI	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
BssSI	CACGAG	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	881
Bst2UI	CCWGG	4 cut(s)	65, 446, 566, 1084
Bst6I	CTCTTC	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	917
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	733
BstC8I	GCNNGC	1 cut(s)	1018
BstF5I	GGATG	3 cut(s)	436, 475, 540
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	3 cut(s)	342, 436, 993
BstKTI	GATC	6 cut(s)	172, 265, 295, 847, 879, 1054
BstMAI	GTCTC	2 cut(s)	378, 600
BstMBI	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 354, 515, 524, 1017, 1022
BstNI	CCWGG	4 cut(s)	65, 446, 566, 1084
BstSCI	CCNGG	8 cut(s)	63, 444, 564, 647, 648, 752, 753, 1082
BstSFI	CTRYAG	1 cut(s)	1047
BstSNI	TACGTA	1 cut(s)	59
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	3 cut(s)	391, 980, 983
BstV2I	GAAGAC	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	169, 876
BstYI	RGATCY	2 cut(s)	169, 876
BsuI	GTATCC	1 cut(s)	1033
BsuRI	GGCC	3 cut(s)	614, 872, 983
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	3 cut(s)	436, 475, 540
BtsIMutI	CAGTG	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	1018
CciI	TCATGA	2 cut(s)	307, 952
CfoI	GCGC	3 cut(s)	342, 436, 993
Cfr13I	GGNCC	3 cut(s)	625, 676, 1001
Cfr9I	CCCGGG	2 cut(s)	648, 753
CseI	GACGC	1 cut(s)	568
Csp6I	GTAC	4 cut(s)	361, 549, 918, 925
CviAII	CATG	3 cut(s)	308, 691, 953
CviQI	GTAC	4 cut(s)	361, 549, 918, 925
DpnI	GATC	6 cut(s)	171, 264, 294, 846, 878, 1053
DpnII	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	870
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	1012
Eco105I	TACGTA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	984
Eco47I	GGWCC	3 cut(s)	625, 676, 1001
Eco47III	AGCGCT	1 cut(s)	992
Eco88I	CYCGRG	2 cut(s)	648, 753
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	4 cut(s)	63, 444, 564, 1082
EcoT14I	CCWWGG	1 cut(s)	984
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	3 cut(s)	311, 694, 956
FaqI	GGGAC	2 cut(s)	631, 736
FatI	CATG	3 cut(s)	307, 690, 952
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	380, 994, 997
FokI	GGATG	3 cut(s)	443, 482, 547
Fsp4HI	GCNGC	3 cut(s)	380, 994, 997
FspBI	CTAG	1 cut(s)	113
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	3 cut(s)	341, 435, 992
GluI	GCNGC	3 cut(s)	380, 994, 997
GsuI	CTGGAG	1 cut(s)	1105
HaeII	RGCGCY	1 cut(s)	994
HaeIII	GGCC	3 cut(s)	614, 872, 983
HapII	CCGG	2 cut(s)	649, 754
HgaI	GACGC	1 cut(s)	568
HhaI	GCGC	3 cut(s)	342, 436, 993
Hin1II	CATG	3 cut(s)	311, 694, 956
Hin6I	GCGC	3 cut(s)	340, 434, 991
HinP1I	GCGC	3 cut(s)	340, 434, 991
HindIII	AAGCTT	2 cut(s)	591, 815
HinfI	GANTC	7 cut(s)	107, 274, 311, 386, 569, 608, 662
HpaII	CCGG	2 cut(s)	649, 754
Hpy166II	GTNNAC	1 cut(s)	1072
Hpy188I	TCNGA	2 cut(s)	844, 851
Hpy188III	TCNNGA	7 cut(s)	113, 173, 271, 308, 666, 953, 1055
Hpy8I	GTNNAC	1 cut(s)	1072
HpyAV	CCTTC	3 cut(s)	613, 667, 772
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	456, 585, 911
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 354, 515, 524, 1017, 1022
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	311, 694, 956
HspAI	GCGC	3 cut(s)	340, 434, 991
KpnI	GGTACC	1 cut(s)	928
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
LmnI	GCTCC	8 cut(s)	88, 416, 601, 713, 946, 988, 1025, 1057
Lsp1109I	GCAGC	3 cut(s)	391, 980, 983
LweI	GCATC	2 cut(s)	421, 460
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	58
MalI	GATC	6 cut(s)	171, 264, 294, 846, 878, 1053
MboI	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
MboII	GAAGA	5 cut(s)	85, 137, 202, 272, 808
MflI	RGATCY	2 cut(s)	169, 876
MlsI	TGGCCA	1 cut(s)	872
MluCI	AATT	5 cut(s)	23, 31, 324, 552, 767
MluNI	TGGCCA	1 cut(s)	872
MlyI	GAGTC	4 cut(s)	320, 380, 563, 602
MmeI	TCCRAC	2 cut(s)	639, 744
Mox20I	TGGCCA	1 cut(s)	872
Mph1103I	ATGCAT	1 cut(s)	913
MscI	TGGCCA	1 cut(s)	872
MseI	TTAA	2 cut(s)	596, 894
MslI	CAYNNNNRTG	1 cut(s)	689
Msp20I	TGGCCA	1 cut(s)	872
MspI	CCGG	2 cut(s)	649, 754
MspR9I	CCNGG	8 cut(s)	65, 446, 566, 649, 650, 754, 755, 1084
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	4 cut(s)	65, 446, 566, 1084
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	6 cut(s)	60, 354, 515, 524, 1017, 1022
NciI	CCSGG	4 cut(s)	649, 650, 754, 755
NdeII	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
NlaIII	CATG	3 cut(s)	311, 694, 956
NlaIV	GGNNCC	4 cut(s)	6, 926, 948, 1003
NmeAIII	GCCGAG	2 cut(s)	590, 1057
NsbI	TGCGCA	1 cut(s)	435
NsiI	ATGCAT	1 cut(s)	913
NspV	TTCGAA	1 cut(s)	733
PagI	TCATGA	2 cut(s)	307, 952
PctI	GAATGC	1 cut(s)	913
PfeI	GAWTC	3 cut(s)	107, 274, 662
PkrI	GCNGC	3 cut(s)	381, 995, 998
PleI	GAGTC	4 cut(s)	319, 380, 563, 602
PpsI	GAGTC	4 cut(s)	319, 380, 563, 602
Ppu21I	YACGTR	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	676
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	4 cut(s)	63, 444, 564, 1082
PspGI	CCWGG	4 cut(s)	63, 444, 564, 1082
PspN4I	GGNNCC	4 cut(s)	6, 926, 948, 1003
PspPI	GGNCC	3 cut(s)	625, 676, 1001
PspPPI	RGGWCCY	1 cut(s)	676
PsuI	RGATCY	2 cut(s)	169, 876
RsaI	GTAC	4 cut(s)	362, 550, 919, 926
RsaNI	GTAC	4 cut(s)	361, 549, 918, 925
RseI	CAYNNNNRTG	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	596, 894
SatI	GCNGC	3 cut(s)	380, 994, 997
Sau3AI	GATC	6 cut(s)	169, 262, 292, 844, 876, 1051
Sau96I	GGNCC	3 cut(s)	625, 676, 1001
SchI	GAGTC	4 cut(s)	320, 380, 563, 602
ScrFI	CCNGG	8 cut(s)	65, 446, 566, 649, 650, 754, 755, 1084
SfaNI	GCATC	2 cut(s)	421, 460
SfcI	CTRYAG	1 cut(s)	1047
SfuI	TTCGAA	1 cut(s)	733
SinI	GGWCC	3 cut(s)	625, 676, 1001
SmaI	CCCGGG	2 cut(s)	650, 755
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	143, 173, 185
SmoI	CTYRAG	3 cut(s)	143, 173, 185
SnaBI	TACGTA	1 cut(s)	59
Sse9I	AATT	5 cut(s)	23, 31, 324, 552, 767
SsiI	CCGC	2 cut(s)	999, 1023
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	8 cut(s)	63, 444, 564, 647, 648, 752, 753, 1082
StyI	CCWWGG	1 cut(s)	984
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	733
TasI	AATT	5 cut(s)	23, 31, 324, 552, 767
TatI	WGTACW	3 cut(s)	360, 548, 917
TfiI	GAWTC	3 cut(s)	107, 274, 662
Tru1I	TTAA	2 cut(s)	596, 894
Tru9I	TTAA	2 cut(s)	596, 894
TscAI	CASTG	1 cut(s)	546
TseI	GCWGC	3 cut(s)	379, 993, 996
TspDTI	ATGAA	4 cut(s)	26, 273, 707, 969
TspMI	CCCGGG	2 cut(s)	648, 753
TspRI	CASTG	1 cut(s)	546
VpaK11BI	GGWCC	3 cut(s)	625, 676, 1001
XbaI	TCTAGA	1 cut(s)	112
XmaI	CCCGGG	2 cut(s)	648, 753
XspI	CTAG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.