Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8107252.1

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 606

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8107252.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

aggatagctttggctgagaggcttactaaggcgaaaaaggcgtgggaggctgagaggatggcactgacaagtacaattttgacgcaccaggactccacttggaaatacaaccaagctttaaaggagcgagactcagccttgaaggaggtccaaaaagatttgtccaagtcccaggttgagttggaatcaggaaagaaggacctcaacacagccatgaacgagctgaacattttgggagcagagctaaatgaggttcgaaaggacttgtccgagtcccgggctaagttgcaattaggcaagaaggtgtgggaggctgagaagatggaactgactaagaagcttaacaagtttggaacaggaaactctgatctcagagaggagttgtatgacttggccaagatccacgagaagcacattaaagaaaatgagaatgcgtattgtacagggtacctgactgggtggttcagggagcctcatgaatatatttccctgcgaggctatgaggccaaggaagttactcttccggttcacaatcctctggaggccacatcttcacattctcattctcgtgccacaattagacgtttcggaagtgctggtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.98

Weight (kDa)

8.8

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	393
AfaI	GTAC	3 cut(s)	73, 442, 449
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	87, 171
AluBI	AGCT	5 cut(s)	8, 116, 223, 244, 340
AluI	AGCT	5 cut(s)	8, 116, 223, 244, 340
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	3 cut(s)	393, 504, 543
Asp718I	GGTACC	1 cut(s)	447
AspS9I	GGNCC	3 cut(s)	148, 199, 599
AsuC2I	CCSGG	2 cut(s)	277, 278
AsuII	TTCGAA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	3 cut(s)	148, 199, 599
BalI	TGGCCA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	447
BauI	CACGAG	2 cut(s)	404, 567
BccI	CCATC	2 cut(s)	52, 316
BciT130I	CCWGG	2 cut(s)	89, 173
BcnI	CCSGG	2 cut(s)	277, 278
BcoDI	GTCTC	1 cut(s)	123
Bme1390I	CCNGG	4 cut(s)	89, 173, 277, 278
Bme18I	GGWCC	3 cut(s)	148, 199, 599
BmeT110I	CYCGRG	1 cut(s)	276
BmgT120I	GGNCC	3 cut(s)	148, 199, 599
BmiI	GGNNCC	2 cut(s)	449, 471
BmrFI	CCNGG	4 cut(s)	89, 173, 277, 278
BmrI	ACTGGG	1 cut(s)	465
BmuI	ACTGGG	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	560
Bpu14I	TTCGAA	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	277, 278
BsaJI	CCNNGG	3 cut(s)	171, 276, 507
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	89, 173
BseDI	CCNNGG	3 cut(s)	171, 276, 507
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	5 cut(s)	6, 42, 147, 306, 385
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	395, 506, 545
BshNI	GGYRCC	1 cut(s)	447
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	277, 524
BslFI	GGGAC	2 cut(s)	154, 259
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	123
BsmFI	GGGAC	2 cut(s)	154, 259
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	3 cut(s)	395, 506, 545
BsoBI	CYCGRG	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	367, 399
BspANI	GGCC	3 cut(s)	395, 506, 545
BspCNI	CTCAG	5 cut(s)	7, 43, 146, 307, 384
BspHI	TCATGA	1 cut(s)	475
BspLI	GGNNCC	2 cut(s)	449, 471
BspPI	GGATC	1 cut(s)	394
BspT104I	TTCGAA	1 cut(s)	256
BspT107I	GGYRCC	1 cut(s)	447
BsrGI	TGTACA	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	171, 276, 507
BssMI	GATC	2 cut(s)	367, 399
BssSI	CACGAG	2 cut(s)	404, 567
BssT1I	CCWWGG	1 cut(s)	507
Bst2BI	CACGAG	2 cut(s)	404, 567
Bst2UI	CCWGG	2 cut(s)	89, 173
Bst6I	CTCTTC	1 cut(s)	525
BstAUI	TGTACA	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	256
BstDEI	CTNAG	8 cut(s)	15, 27, 51, 133, 282, 315, 333, 371
BstF5I	GGATG	1 cut(s)	63
BstKTI	GATC	2 cut(s)	370, 402
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	367, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	2 cut(s)	89, 173
BstSCI	CCNGG	4 cut(s)	87, 171, 275, 276
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	395, 506, 545
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	475
Cfr13I	GGNCC	3 cut(s)	148, 199, 599
Cfr9I	CCCGGG	1 cut(s)	276
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	72, 441, 448
CviAII	CATG	2 cut(s)	214, 476
CviQI	GTAC	3 cut(s)	72, 441, 448
DdeI	CTNAG	8 cut(s)	15, 27, 51, 133, 282, 315, 333, 371
DpnI	GATC	2 cut(s)	369, 401
DpnII	GATC	2 cut(s)	367, 399
DraI	TTTAAA	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	507
Eco47I	GGWCC	3 cut(s)	148, 199, 599
Eco88I	CYCGRG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	87, 171
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	2 cut(s)	217, 479
FaiI	YATR	6 cut(s)	215, 387, 477, 483, 501, 604
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	2 cut(s)	154, 259
FatI	CATG	2 cut(s)	213, 475
FokI	GGATG	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	395, 506, 545
HapII	CCGG	2 cut(s)	277, 524
HgaI	GACGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	217, 479
HindIII	AAGCTT	2 cut(s)	114, 338
HinfI	GANTC	4 cut(s)	92, 131, 185, 272
HpaII	CCGG	2 cut(s)	277, 524
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	4 cut(s)	271, 367, 374, 590
Hpy188III	TCNNGA	3 cut(s)	189, 476, 539
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	3 cut(s)	136, 190, 295
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	1 cut(s)	289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	8 cut(s)	15, 27, 51, 133, 282, 315, 333, 371
HpySE526I	ACGT	1 cut(s)	583
Hsp92II	CATG	2 cut(s)	217, 479
KpnI	GGTACC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	367, 399
LmnI	GCTCC	3 cut(s)	124, 236, 469
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	2 cut(s)	369, 401
MboI	GATC	2 cut(s)	367, 399
MboII	GAAGA	3 cut(s)	331, 512, 543
MflI	RGATCY	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	3 cut(s)	75, 290, 576
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	3 cut(s)	86, 125, 281
MmeI	TCCRAC	1 cut(s)	162
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	3 cut(s)	119, 342, 417
MslI	CAYNNNNRTG	2 cut(s)	212, 567
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	2 cut(s)	277, 524
MspR9I	CCNGG	4 cut(s)	89, 173, 277, 278
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	89, 173
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NciI	CCSGG	2 cut(s)	277, 278
NdeII	GATC	2 cut(s)	367, 399
NlaIII	CATG	2 cut(s)	217, 479
NlaIV	GGNNCC	2 cut(s)	449, 471
NspV	TTCGAA	1 cut(s)	256
PagI	TCATGA	1 cut(s)	475
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	185
PleI	GAGTC	3 cut(s)	86, 125, 280
PpsI	GAGTC	3 cut(s)	86, 125, 280
PpuMI	RGGWCCY	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	87, 171
PspGI	CCWGG	2 cut(s)	87, 171
PspN4I	GGNNCC	2 cut(s)	449, 471
PspPI	GGNCC	3 cut(s)	148, 199, 599
PspPPI	RGGWCCY	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	3 cut(s)	73, 442, 449
RsaNI	GTAC	3 cut(s)	72, 441, 448
RseI	CAYNNNNRTG	2 cut(s)	212, 567
SaqAI	TTAA	3 cut(s)	119, 342, 417
Sau3AI	GATC	2 cut(s)	367, 399
Sau96I	GGNCC	3 cut(s)	148, 199, 599
SchI	GAGTC	3 cut(s)	86, 125, 281
ScrFI	CCNGG	4 cut(s)	89, 173, 277, 278
SfuI	TTCGAA	1 cut(s)	256
SinI	GGWCC	3 cut(s)	148, 199, 599
SmaI	CCCGGG	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	212, 567
Sse9I	AATT	3 cut(s)	75, 290, 576
StyD4I	CCNGG	4 cut(s)	87, 171, 275, 276
StyI	CCWWGG	1 cut(s)	507
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	256
TasI	AATT	3 cut(s)	75, 290, 576
TatI	WGTACW	2 cut(s)	71, 440
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	119, 342, 417
Tru9I	TTAA	3 cut(s)	119, 342, 417
TscAI	CASTG	1 cut(s)	69
TspDTI	ATGAA	2 cut(s)	230, 492
TspMI	CCCGGG	1 cut(s)	276
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	3 cut(s)	148, 199, 599
XmaI	CCCGGG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.