Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Forward (+)

20062262 .. 20064735

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAAACTAGAATATGATCACTATGAAAACCATATCCATATCACAAGTTCACGGAAGAAAAAAGGCACCGTCACTATTAAAACCATATTCCAAATTGTAATTGAAGAATTTCCAATCTTTTCTTCTGACAACAGATTAGTGGAAAATAGCAGGAAATTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGACCTGAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGAAATGTGAGGCTCAAAATAAACAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAAGCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTGGATCAGGTTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGCAATGAATTGATTAGCAAGTACAATTACAACCAAGTATGGAAGCAGCGAGACTCAACCTTAGCAAAGTTGAACACCATTGGAGCAGAGCTACAGGAGGCACAAAATGACTTGGAATTAGGCAAGAAGGTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTTCTAATGCAAAGCAGGCATGGGAGGCTGACAAGATAGCACTGATTGATAATATTTTGACAAAAGAGCGTGAGGACTTCACTTTCAAATACAACCAAGCTTTGAAGGAGCGAGACGCAGCCTTGAGTGAGCTGAAAAACCTTGGAGTAAAGCTGAAGGTGGTCCAAAAAGAATTATACAAGTCCAATGATGAGTTGGAATCAGGAAAGAAGGAGCTCGACATGGCCTTGAATGAACTGAAGATCTTGGGAGCACAGCTAAATGGGGTCCGAAAGGACTTGTCCGAGTTGGAATTTGGTAAGAAGGTGTGGGAGGCTGAGAAAATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGAGATAAAGGGGATCAGAGAGGAGTTGTCTGACTTGGCCAAGATCCACGAGAAGCACATTCAAGAAAATGAGAATGCATATTGCGCAGGGTACCTGACTGGATGGTTCAGGGAGCCCCACGAATATATTTCCCTGCGAAGCCATGAGGCCAAGGAAGTTACTCTTCCGGATCATAAACCTCTGGAGGCCACATCTTCACTTTCTCATTCTCGTGCCTTAATTAGACTTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

411

Amino Acids

47.67

Weight (kDa)

6.9

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1072
Acc65I	GGTACC	1 cut(s)	1077
AccB1I	GGYRCC	2 cut(s)	65, 1077
AccIII	TCCGGA	1 cut(s)	1153
AclWI	GGATC	4 cut(s)	423, 1007, 1024, 1164
AcoI	YGGCCR	1 cut(s)	1023
AcsI	RAATTY	3 cut(s)	107, 155, 920
AcuI	CTGAAG	2 cut(s)	803, 887
AfaI	GTAC	3 cut(s)	201, 485, 1079
AgsI	TTSAA	6 cut(s)	104, 535, 715, 733, 859, 1049
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
Alw21I	GWGCWC	2 cut(s)	846, 883
Alw26I	GTCTC	2 cut(s)	507, 735
AlwI	GGATC	4 cut(s)	423, 1007, 1024, 1164
Aor13HI	TCCGGA	1 cut(s)	1153
AoxI	GGCC	4 cut(s)	852, 1023, 1134, 1173
ApeKI	GCWGC	3 cut(s)	211, 508, 746
ApoI	RAATTY	3 cut(s)	107, 155, 920
Asp700I	GAANNNNTTC	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	1077
AspLEI	GCGC	2 cut(s)	465, 1073
AspS9I	GGNCC	4 cut(s)	175, 790, 895, 1229
AvaII	GGWCC	4 cut(s)	175, 790, 895, 1229
BalI	TGGCCA	1 cut(s)	1025
BanI	GGYRCC	2 cut(s)	65, 1077
BanII	GRGCYC	2 cut(s)	846, 1104
BauI	CACGAG	2 cut(s)	1034, 1197
Bbv12I	GWGCWC	2 cut(s)	846, 883
BbvI	GCAGC	3 cut(s)	223, 520, 758
BccI	CCATC	1 cut(s)	1083
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	507, 735
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	554
BglII	AGATCT	2 cut(s)	292, 870
BisI	GCNGC	3 cut(s)	212, 509, 747
BlsI	GCNGC	3 cut(s)	213, 510, 748
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	4 cut(s)	175, 790, 895, 1229
BmgT120I	GGNCC	4 cut(s)	175, 790, 895, 1229
BmiI	GGNNCC	4 cut(s)	67, 896, 1079, 1101
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	1190
Bpu10I	CCTNAGC	1 cut(s)	523
BpuEI	CTTGAG	5 cut(s)	219, 287, 317, 329, 772
BsaAI	YACGTR	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	769, 1137
BsaWI	WCCGGW	1 cut(s)	1153
Bse1I	ACTGG	3 cut(s)	177, 417, 1090
Bse3DI	GCAATG	1 cut(s)	472
BseAI	TCCGGA	1 cut(s)	1153
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	2 cut(s)	769, 1137
BseGI	GGATG	2 cut(s)	604, 1094
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	4 cut(s)	245, 594, 612, 936
BseNI	ACTGG	3 cut(s)	177, 417, 1090
BseRI	GAGGAG	2 cut(s)	454, 1022
BseXI	GCAGC	3 cut(s)	223, 520, 758
BshFI	GGCC	4 cut(s)	854, 1025, 1136, 1175
BshNI	GGYRCC	2 cut(s)	65, 1077
BsiHKAI	GWGCWC	2 cut(s)	846, 883
BsiSI	CCGG	1 cut(s)	1154
BsmAI	GTCTC	2 cut(s)	507, 735
BsmBI	CGTCTC	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	4 cut(s)	854, 1025, 1136, 1175
Bsp1286I	GDGCHC	3 cut(s)	846, 883, 1104
Bsp13I	TCCGGA	1 cut(s)	1153
Bsp143I	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
BspANI	GGCC	4 cut(s)	854, 1025, 1136, 1175
BspCNI	CTCAG	4 cut(s)	246, 595, 613, 937
BspEI	TCCGGA	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	67, 896, 1079, 1101
BspPI	GGATC	4 cut(s)	423, 1007, 1024, 1164
BspT107I	GGYRCC	2 cut(s)	65, 1077
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	177, 417, 1090
BssECI	CCNNGG	2 cut(s)	769, 1137
BssMI	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
BssSI	CACGAG	2 cut(s)	1034, 1197
BssT1I	CCWWGG	2 cut(s)	769, 1137
Bst2BI	CACGAG	2 cut(s)	1034, 1197
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	1155
BstBAI	YACGTR	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	7 cut(s)	254, 352, 523, 603, 621, 945, 963
BstF5I	GGATG	2 cut(s)	604, 1094
BstHHI	GCGC	2 cut(s)	465, 1073
BstKTI	GATC	8 cut(s)	19, 295, 388, 418, 873, 1002, 1032, 1159
BstMAI	GTCTC	2 cut(s)	507, 735
BstMBI	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	644, 653, 1070
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	554
BstSNI	TACGTA	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	223, 520, 758
BstX2I	RGATCY	3 cut(s)	292, 870, 1029
BstYI	RGATCY	3 cut(s)	292, 870, 1029
BsuRI	GGCC	4 cut(s)	854, 1025, 1136, 1175
BtsCI	GGATG	2 cut(s)	604, 1094
BtsIMutI	CAGTG	1 cut(s)	668
Cac8I	GCNNGC	1 cut(s)	645
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	2 cut(s)	465, 1073
Cfr13I	GGNCC	4 cut(s)	175, 790, 895, 1229
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	3 cut(s)	200, 484, 1078
CviAII	CATG	4 cut(s)	431, 648, 850, 1130
CviQI	GTAC	3 cut(s)	200, 484, 1078
DdeI	CTNAG	7 cut(s)	254, 352, 523, 603, 621, 945, 963
DpnI	GATC	8 cut(s)	18, 294, 387, 417, 872, 1001, 1031, 1158
DpnII	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
EaeI	YGGCCR	1 cut(s)	1023
Eam1104I	CTCTTC	1 cut(s)	1155
EarI	CTCTTC	1 cut(s)	1155
Ecl136II	GAGCTC	1 cut(s)	844
Eco105I	TACGTA	1 cut(s)	182
Eco130I	CCWWGG	2 cut(s)	769, 1137
Eco24I	GRGCYC	2 cut(s)	846, 1104
Eco47I	GGWCC	4 cut(s)	175, 790, 895, 1229
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	2 cut(s)	803, 887
EcoICRI	GAGCTC	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	769, 1137
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	2 cut(s)	846, 1104
ErhI	CCWWGG	2 cut(s)	769, 1137
Esp3I	CGTCTC	1 cut(s)	735
FaeI	CATG	4 cut(s)	434, 651, 853, 1133
FalI	AAGNNNNNCTT	2 cut(s)	1134, 1166
FatI	CATG	4 cut(s)	430, 647, 849, 1129
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	212, 509, 747
FokI	GGATG	2 cut(s)	611, 1101
FriOI	GRGCYC	2 cut(s)	846, 1104
Fsp4HI	GCNGC	3 cut(s)	212, 509, 747
FspBI	CTAG	1 cut(s)	8
FspI	TGCGCA	1 cut(s)	1072
GlaI	GCGC	2 cut(s)	464, 1072
GluI	GCNGC	3 cut(s)	212, 509, 747
GsuI	CTGGAG	1 cut(s)	1190
HaeIII	GGCC	4 cut(s)	854, 1025, 1136, 1175
HapII	CCGG	1 cut(s)	1154
HgaI	GACGC	1 cut(s)	752
HhaI	GCGC	2 cut(s)	465, 1073
Hin1II	CATG	4 cut(s)	434, 651, 853, 1133
Hin6I	GCGC	2 cut(s)	463, 1071
HinP1I	GCGC	2 cut(s)	463, 1071
HindIII	AAGCTT	2 cut(s)	726, 968
HinfI	GANTC	4 cut(s)	397, 434, 515, 827
HpaII	CCGG	1 cut(s)	1154
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	6 cut(s)	127, 899, 913, 1004, 1018, 1220
Hpy188III	TCNNGA	8 cut(s)	236, 296, 394, 431, 831, 1049, 1154, 1169
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	190, 583, 727, 778, 832, 925
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	638, 1064
HpyF10VI	GCNNNNNNNGC	3 cut(s)	644, 653, 1070
HpyF3I	CTNAG	7 cut(s)	254, 352, 523, 603, 621, 945, 963
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	434, 651, 853, 1133
HspAI	GCGC	2 cut(s)	463, 1071
Kpn2I	TCCGGA	1 cut(s)	1153
KpnI	GGTACC	1 cut(s)	1081
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
LmnI	GCTCC	5 cut(s)	545, 736, 841, 878, 1099
Lsp1109I	GCAGC	3 cut(s)	223, 520, 758
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	70, 1144
MalI	GATC	8 cut(s)	18, 294, 387, 417, 872, 1001, 1031, 1158
MboI	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
MboII	GAAGA	7 cut(s)	67, 114, 116, 395, 880, 1142, 1173
MflI	RGATCY	3 cut(s)	292, 870, 1029
MhlI	GDGCHC	3 cut(s)	846, 883, 1104
MlsI	TGGCCA	1 cut(s)	1025
MluNI	TGGCCA	1 cut(s)	1025
MlyI	GAGTC	2 cut(s)	443, 509
MmeI	TCCRAC	2 cut(s)	804, 897
Mox20I	TGGCCA	1 cut(s)	1025
Mph1103I	ATGCAT	1 cut(s)	1066
MroI	TCCGGA	1 cut(s)	1153
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	1025
MseI	TTAA	5 cut(s)	78, 227, 339, 972, 1205
MslI	CAYNNNNRTG	1 cut(s)	1197
Msp20I	TGGCCA	1 cut(s)	1025
MspI	CCGG	1 cut(s)	1154
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	644, 653, 1070
NdeII	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
NlaIII	CATG	4 cut(s)	434, 651, 853, 1133
NlaIV	GGNNCC	4 cut(s)	67, 896, 1079, 1101
NmuCI	GTSAC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	1072
NsiI	ATGCAT	1 cut(s)	1066
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	397, 827
PkrI	GCNGC	3 cut(s)	213, 510, 748
PleI	GAGTC	2 cut(s)	442, 509
PpsI	GAGTC	2 cut(s)	442, 509
Ppu21I	YACGTR	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	4 cut(s)	67, 896, 1079, 1101
PspPI	GGNCC	4 cut(s)	175, 790, 895, 1229
PsuI	RGATCY	3 cut(s)	292, 870, 1029
RsaI	GTAC	3 cut(s)	201, 485, 1079
RsaNI	GTAC	3 cut(s)	200, 484, 1078
RseI	CAYNNNNRTG	1 cut(s)	1197
SacI	GAGCTC	1 cut(s)	846
SaqAI	TTAA	5 cut(s)	78, 227, 339, 972, 1205
SatI	GCNGC	3 cut(s)	212, 509, 747
Sau3AI	GATC	8 cut(s)	16, 292, 385, 415, 870, 999, 1029, 1156
Sau96I	GGNCC	4 cut(s)	175, 790, 895, 1229
SchI	GAGTC	2 cut(s)	443, 509
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	846, 883, 1104
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	554
SinI	GGWCC	4 cut(s)	175, 790, 895, 1229
SmiMI	CAYNNNNRTG	1 cut(s)	1197
SmlI	CTYRAG	5 cut(s)	234, 266, 296, 308, 751
SmoI	CTYRAG	5 cut(s)	234, 266, 296, 308, 751
SnaBI	TACGTA	1 cut(s)	182
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	1 cut(s)	846
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	769, 1137
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	3 cut(s)	283, 437, 846
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	397, 827
Tru1I	TTAA	5 cut(s)	78, 227, 339, 972, 1205
Tru9I	TTAA	5 cut(s)	78, 227, 339, 972, 1205
TscAI	CASTG	1 cut(s)	675
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	3 cut(s)	211, 508, 746
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	6 cut(s)	17, 39, 149, 396, 483, 876
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	675
VpaK11BI	GGWCC	4 cut(s)	175, 790, 895, 1229
XapI	RAATTY	3 cut(s)	107, 155, 920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	820
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.