Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

72496667 .. 72498663

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG455000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAATGAGGGGAACCCTGGTATCTTAGACAATGTTAATCCAGCTGGCACCGCCCTCAACCTACTTTGTTGTTCCTGGTTTGCAATGGTTCCAGCAGGAGAACTTCAATTTGGCAATTTTCATCAAGTTTTACTGAACCTACGTAGCCAGGTTGAGAAGATAGTCAATGAGGGGCAGAAAGCTCTGTTAGAATCTCCAGAGCAAAAGGAAGACCTAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAACAAAGATCTTGAGAAAGAACTTGAGAAGAGTGAGGCTCAAAATAAAGAGCTTCACAATATAGTCTTAGACCAGCATGCAGCCTTGTCAAGCTATGAGGATCAAATCAAGAATCTAAAGAAAGAACTTGATCAGGCTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCATGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCTTAGAGAAGTTGAATACCATTGGAGCAGAGCTAAAGGACTTGGAATTGAGCAAGAATGTCTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAGGCGAAAAAGGCGTGGGAGGCTGAGAGGATGGCACTGACAAGTACAATTTTGACGCACCAGGACTCCACTTGGAAATACAACCAAGCTTTAAAGGAGCGAGACTCAGCCTTGAAGGAGGTCCAAAAGGATTTGTCCAAGTCCCGGGTTGAGTTGGAATCAGGAAAGAAGGACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGGTTCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTAGGCAAGAAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGGAAACTCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGAAGCACATTAAAGAAAATGAGAATGCGTATTGTACAGGGTACCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGCGAGGCTATGAGGCCAAGGAAGTTACTCTTCCGGTTCACAATCCTCTGGAGGCCACATCTTCACATTCTCATTCTCGTGCCACAATTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

43.63

Weight (kDa)

6.12

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	996
AccB1I	GGYRCC	2 cut(s)	47, 996
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	354, 943
AcoI	YGGCCR	1 cut(s)	942
AfaI	GTAC	4 cut(s)	446, 622, 991, 998
AfiI	CCNNNNNNNGG	2 cut(s)	720, 825
AgsI	TTSAA	4 cut(s)	107, 460, 490, 691
AjnI	CCWGG	4 cut(s)	16, 74, 147, 636
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
Alw26I	GTCTC	2 cut(s)	462, 672
AlwI	GGATC	2 cut(s)	354, 943
Ama87I	CYCGRG	2 cut(s)	720, 825
AoxI	GGCC	3 cut(s)	942, 1053, 1092
ApeKI	GCWGC	2 cut(s)	326, 463
Asp718I	GGTACC	1 cut(s)	996
AspS9I	GGNCC	3 cut(s)	697, 748, 1148
AsuC2I	CCSGG	4 cut(s)	721, 722, 826, 827
AsuII	TTCGAA	1 cut(s)	805
AvaI	CYCGRG	2 cut(s)	720, 825
AvaII	GGWCC	3 cut(s)	697, 748, 1148
BaeI	ACNNNNGTAYC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	944
BanI	GGYRCC	2 cut(s)	47, 996
BauI	CACGAG	2 cut(s)	953, 1116
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	338, 475
BccI	CCATC	3 cut(s)	422, 601, 865
BciT130I	CCWGG	4 cut(s)	18, 76, 149, 638
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	4 cut(s)	721, 722, 826, 827
BcoDI	GTCTC	2 cut(s)	462, 672
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	2 cut(s)	327, 464
BlsI	GCNGC	2 cut(s)	328, 465
Bme1390I	CCNGG	8 cut(s)	18, 76, 149, 638, 721, 722, 826, 827
Bme18I	GGWCC	3 cut(s)	697, 748, 1148
BmeT110I	CYCGRG	2 cut(s)	720, 825
BmgT120I	GGNCC	3 cut(s)	697, 748, 1148
BmiI	GGNNCC	5 cut(s)	14, 49, 90, 998, 1020
BmrFI	CCNGG	8 cut(s)	18, 76, 149, 638, 721, 722, 826, 827
BmrI	ACTGGG	1 cut(s)	1014
BmsI	GCATC	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	1014
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	4 cut(s)	268, 300, 665, 697
BpmI	CTGGAG	2 cut(s)	180, 1109
Bpu14I	TTCGAA	1 cut(s)	805
BpuEI	CTTGAG	3 cut(s)	248, 278, 290
BpuMI	CCSGG	4 cut(s)	721, 722, 826, 827
BsaAI	YACGTR	1 cut(s)	143
BsaJI	CCNNGG	4 cut(s)	16, 720, 825, 1056
BsaWI	WCCGGW	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	720, 825
Bse1I	ACTGG	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	4 cut(s)	18, 76, 149, 638
BseDI	CCNNGG	4 cut(s)	16, 720, 825, 1056
BseGI	GGATG	2 cut(s)	547, 612
BseLI	CCNNNNNNNGG	2 cut(s)	720, 825
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	7 cut(s)	486, 537, 555, 591, 696, 855, 934
BseNI	ACTGG	1 cut(s)	1009
BseRI	GAGGAG	2 cut(s)	415, 941
BseXI	GCAGC	2 cut(s)	338, 475
BshFI	GGCC	3 cut(s)	944, 1055, 1094
BshNI	GGYRCC	2 cut(s)	47, 996
BsiHKCI	CYCGRG	2 cut(s)	720, 825
BsiSI	CCGG	3 cut(s)	721, 826, 1073
BslFI	GGGAC	2 cut(s)	703, 808
BslI	CCNNNNNNNGG	2 cut(s)	720, 825
BsmAI	GTCTC	2 cut(s)	462, 672
BsmFI	GGGAC	2 cut(s)	703, 808
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	3 cut(s)	944, 1055, 1094
BsoBI	CYCGRG	2 cut(s)	720, 825
Bsp119I	TTCGAA	1 cut(s)	805
Bsp1407I	TGTACA	1 cut(s)	989
Bsp143I	GATC	5 cut(s)	253, 346, 376, 916, 948
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	944, 1055, 1094
BspCNI	CTCAG	7 cut(s)	485, 538, 556, 592, 695, 856, 933
BspHI	TCATGA	2 cut(s)	391, 1024
BspLI	GGNNCC	5 cut(s)	14, 49, 90, 998, 1020
BspPI	GGATC	2 cut(s)	354, 943
BspT104I	TTCGAA	1 cut(s)	805
BspT107I	GGYRCC	2 cut(s)	47, 996
BsrDI	GCAATG	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	989
BsrI	ACTGG	1 cut(s)	1009
BssECI	CCNNGG	4 cut(s)	16, 720, 825, 1056
BssMI	GATC	5 cut(s)	253, 346, 376, 916, 948
BssSI	CACGAG	2 cut(s)	953, 1116
BssT1I	CCWWGG	1 cut(s)	1056
Bst2BI	CACGAG	2 cut(s)	953, 1116
Bst2UI	CCWGG	4 cut(s)	18, 76, 149, 638
Bst6I	CTCTTC	2 cut(s)	269, 1074
BstAUI	TGTACA	1 cut(s)	989
BstBAI	YACGTR	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	46, 324, 385
BstF5I	GGATG	2 cut(s)	547, 612
BstKTI	GATC	5 cut(s)	256, 349, 379, 919, 951
BstMAI	GTCTC	2 cut(s)	462, 672
BstMBI	GATC	5 cut(s)	253, 346, 376, 916, 948
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 438, 587, 596
BstNI	CCWGG	4 cut(s)	18, 76, 149, 638
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	8 cut(s)	16, 74, 147, 636, 719, 720, 824, 825
BstSNI	TACGTA	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	338, 475
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	253, 948
BstYI	RGATCY	2 cut(s)	253, 948
BsuRI	GGCC	3 cut(s)	944, 1055, 1094
BtsCI	GGATG	2 cut(s)	547, 612
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	3 cut(s)	46, 324, 385
CciI	TCATGA	2 cut(s)	391, 1024
Cfr13I	GGNCC	3 cut(s)	697, 748, 1148
Cfr9I	CCCGGG	2 cut(s)	720, 825
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	4 cut(s)	445, 621, 990, 997
CviAII	CATG	5 cut(s)	323, 392, 425, 763, 1025
CviQI	GTAC	4 cut(s)	445, 621, 990, 997
DpnI	GATC	5 cut(s)	255, 348, 378, 918, 950
DpnII	GATC	5 cut(s)	253, 346, 376, 916, 948
DraI	TTTAAA	1 cut(s)	669
EaeI	YGGCCR	1 cut(s)	942
Eam1104I	CTCTTC	2 cut(s)	269, 1074
EarI	CTCTTC	2 cut(s)	269, 1074
Eco105I	TACGTA	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	1056
Eco47I	GGWCC	3 cut(s)	697, 748, 1148
Eco88I	CYCGRG	2 cut(s)	720, 825
EcoO109I	RGGNCCY	1 cut(s)	748
EcoRII	CCWGG	4 cut(s)	16, 74, 147, 636
EcoT14I	CCWWGG	1 cut(s)	1056
ErhI	CCWWGG	1 cut(s)	1056
FaeI	CATG	5 cut(s)	326, 395, 428, 766, 1028
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	2 cut(s)	703, 808
FatI	CATG	5 cut(s)	322, 391, 424, 762, 1024
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	327, 464
FokI	GGATG	2 cut(s)	554, 619
Fsp4HI	GCNGC	2 cut(s)	327, 464
GluI	GCNGC	2 cut(s)	327, 464
GsuI	CTGGAG	2 cut(s)	180, 1109
HaeIII	GGCC	3 cut(s)	944, 1055, 1094
HapII	CCGG	3 cut(s)	721, 826, 1073
HgaI	GACGC	1 cut(s)	640
Hin1II	CATG	5 cut(s)	326, 395, 428, 766, 1028
HindIII	AAGCTT	2 cut(s)	663, 887
HinfI	GANTC	7 cut(s)	191, 358, 395, 470, 641, 680, 734
HpaII	CCGG	3 cut(s)	721, 826, 1073
Hpy166II	GTNNAC	1 cut(s)	1078
Hpy188I	TCNGA	3 cut(s)	916, 923, 1139
Hpy188III	TCNNGA	7 cut(s)	197, 257, 355, 392, 738, 1025, 1088
Hpy8I	GTNNAC	1 cut(s)	1078
HpyAV	CCTTC	3 cut(s)	685, 739, 844
HpyCH4IV	ACGT	2 cut(s)	142, 1132
HpyCH4V	TGCA	2 cut(s)	83, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 438, 587, 596
HpySE526I	ACGT	2 cut(s)	142, 1132
Hsp92II	CATG	5 cut(s)	326, 395, 428, 766, 1028
KpnI	GGTACC	1 cut(s)	1000
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	5 cut(s)	253, 346, 376, 916, 948
LmnI	GCTCC	4 cut(s)	500, 673, 785, 1018
Lsp1109I	GCAGC	2 cut(s)	338, 475
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	2 cut(s)	142, 1132
MaeIII	GTNAC	1 cut(s)	1063
MalI	GATC	5 cut(s)	255, 348, 378, 918, 950
MboI	GATC	5 cut(s)	253, 346, 376, 916, 948
MboII	GAAGA	6 cut(s)	169, 221, 286, 880, 1061, 1092
MflI	RGATCY	2 cut(s)	253, 948
MlsI	TGGCCA	1 cut(s)	944
MluCI	AATT	7 cut(s)	107, 115, 408, 521, 624, 839, 1125
MluNI	TGGCCA	1 cut(s)	944
MlyI	GAGTC	4 cut(s)	404, 464, 635, 674
MmeI	TCCRAC	2 cut(s)	711, 816
Mox20I	TGGCCA	1 cut(s)	944
MscI	TGGCCA	1 cut(s)	944
MseI	TTAA	4 cut(s)	36, 668, 891, 966
MslI	CAYNNNNRTG	2 cut(s)	761, 1116
Msp20I	TGGCCA	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	721, 826, 1073
MspR9I	CCNGG	8 cut(s)	18, 76, 149, 638, 721, 722, 826, 827
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	4 cut(s)	18, 76, 149, 638
MwoI	GCNNNNNNNGC	4 cut(s)	50, 438, 587, 596
NciI	CCSGG	4 cut(s)	721, 722, 826, 827
NdeII	GATC	5 cut(s)	253, 346, 376, 916, 948
NlaIII	CATG	5 cut(s)	326, 395, 428, 766, 1028
NlaIV	GGNNCC	5 cut(s)	14, 49, 90, 998, 1020
NspI	RCATGY	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	805
PaeI	GCATGC	1 cut(s)	326
PagI	TCATGA	2 cut(s)	391, 1024
PctI	GAATGC	1 cut(s)	985
PfeI	GAWTC	3 cut(s)	191, 358, 734
PkrI	GCNGC	2 cut(s)	328, 465
PleI	GAGTC	4 cut(s)	403, 464, 635, 674
PpsI	GAGTC	4 cut(s)	403, 464, 635, 674
Ppu21I	YACGTR	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	748
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	4 cut(s)	16, 74, 147, 636
PspGI	CCWGG	4 cut(s)	16, 74, 147, 636
PspN4I	GGNNCC	5 cut(s)	14, 49, 90, 998, 1020
PspPI	GGNCC	3 cut(s)	697, 748, 1148
PspPPI	RGGWCCY	1 cut(s)	748
PsuI	RGATCY	2 cut(s)	253, 948
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	446, 622, 991, 998
RsaNI	GTAC	4 cut(s)	445, 621, 990, 997
RseI	CAYNNNNRTG	2 cut(s)	761, 1116
SaqAI	TTAA	4 cut(s)	36, 668, 891, 966
SatI	GCNGC	2 cut(s)	327, 464
Sau3AI	GATC	5 cut(s)	253, 346, 376, 916, 948
Sau96I	GGNCC	3 cut(s)	697, 748, 1148
SchI	GAGTC	4 cut(s)	404, 464, 635, 674
ScrFI	CCNGG	8 cut(s)	18, 76, 149, 638, 721, 722, 826, 827
SfaNI	GCATC	1 cut(s)	532
SfuI	TTCGAA	1 cut(s)	805
SinI	GGWCC	3 cut(s)	697, 748, 1148
SmaI	CCCGGG	2 cut(s)	722, 827
SmiMI	CAYNNNNRTG	2 cut(s)	761, 1116
SmlI	CTYRAG	3 cut(s)	227, 257, 269
SmoI	CTYRAG	3 cut(s)	227, 257, 269
SnaBI	TACGTA	1 cut(s)	143
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	7 cut(s)	107, 115, 408, 521, 624, 839, 1125
SsiI	CCGC	1 cut(s)	51
StyD4I	CCNGG	8 cut(s)	16, 74, 147, 636, 719, 720, 824, 825
StyI	CCWWGG	1 cut(s)	1056
TaiI	ACGT	2 cut(s)	145, 1135
TaqI	TCGA	2 cut(s)	398, 805
TasI	AATT	7 cut(s)	107, 115, 408, 521, 624, 839, 1125
TatI	WGTACW	3 cut(s)	444, 620, 989
TfiI	GAWTC	3 cut(s)	191, 358, 734
Tru1I	TTAA	4 cut(s)	36, 668, 891, 966
Tru9I	TTAA	4 cut(s)	36, 668, 891, 966
TscAI	CASTG	1 cut(s)	618
TseI	GCWGC	2 cut(s)	326, 463
TspDTI	ATGAA	4 cut(s)	17, 110, 779, 1041
TspMI	CCCGGG	2 cut(s)	720, 825
TspRI	CASTG	1 cut(s)	618
VpaK11BI	GGWCC	3 cut(s)	697, 748, 1148
XceI	RCATGY	1 cut(s)	326
XmaI	CCCGGG	2 cut(s)	720, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.