Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003122.1

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

9420 .. 10860

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003122.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaattgaataacaaacttaaccatgagttaaacaagcttggaatagagataatggagctcagagaggagttgtctgacttggagaagatccacaagcaacagattcaagaaaatgagaacgcatattgcgcagggttcctgactagttggttcaaggagcctcatgccaacattgccctgccaagccatgaggccaaggacgttgctcttctagatcatgaacttctggaggccctatctccactctttcacacttctgccttaattaaactgaagtggagccctaaatccaaaaccagaaaattcttcaacatcaccttttcaccgttgcacctagcccgtgctagactagccgctgctgcccaccggcacacccctgctttgcacgctgcccctacagtccttaggcactcatgtgcagcctactgcccctgcatcatcgccgcacgcctgctgcccctgcagcacagcaggacgctcattcctgtgcagatcagccttgttaaattttttagctccactttggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

8.95

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	133
AciI	CCGC	2 cut(s)	357, 447
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	305, 509
AcuI	CTGAAG	1 cut(s)	296
AgsI	TTSAA	4 cut(s)	10, 110, 157, 313
AhlI	ACTAGT	1 cut(s)	146
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	40, 61, 519
AluI	AGCT	3 cut(s)	40, 61, 519
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	85
AoxI	GGCC	2 cut(s)	195, 234
ApeKI	GCWGC	6 cut(s)	359, 362, 392, 422, 457, 466
ApoI	RAATTY	2 cut(s)	305, 509
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	235
AsuHPI	GGTGA	2 cut(s)	310, 318
AxyI	CCTNAGG	1 cut(s)	407
BanII	GRGCYC	2 cut(s)	63, 287
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	6 cut(s)	346, 349, 379, 434, 444, 478
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	5 cut(s)	147, 215, 338, 348, 353
BfmI	CTRYAG	2 cut(s)	399, 464
BisI	GCNGC	8 cut(s)	357, 360, 363, 393, 423, 447, 458, 467
BlsI	GCNGC	8 cut(s)	358, 361, 364, 394, 424, 448, 459, 468
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	140, 162, 284
BmsI	GCATC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	198
Bse118I	RCCGGY	1 cut(s)	369
Bse21I	CCTNAGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	6 cut(s)	346, 349, 379, 434, 444, 478
BsgI	GTGCAG	2 cut(s)	441, 512
BshFI	GGCC	2 cut(s)	197, 236
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	370
BsnI	GGCC	2 cut(s)	197, 236
Bsp1286I	GDGCHC	2 cut(s)	63, 287
Bsp143I	GATC	3 cut(s)	90, 217, 495
BspACI	CCGC	2 cut(s)	357, 447
BspANI	GGCC	2 cut(s)	197, 236
BspCNI	CTCAG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	140, 162, 284
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	369
BssAI	RCCGGY	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	90, 217, 495
BssT1I	CCWWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	330, 403
Bst6I	CTCTTC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	390, 451, 455
BstDEI	CTNAG	2 cut(s)	62, 407
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	93, 220, 498
BstMBI	GATC	3 cut(s)	90, 217, 495
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 176, 353, 362, 389, 463, 466
BstSFI	CTRYAG	2 cut(s)	399, 464
BstV1I	GCAGC	6 cut(s)	346, 349, 379, 434, 444, 478
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	197, 236
BtgZI	GCGATG	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	390, 451, 455
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	235
CseI	GACGC	1 cut(s)	487
CviAII	CATG	5 cut(s)	26, 167, 191, 221, 417
DdeI	CTNAG	2 cut(s)	62, 407
DpnI	GATC	3 cut(s)	92, 219, 497
DpnII	GATC	3 cut(s)	90, 217, 495
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	63, 287
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	296
Eco81I	CCTNAGG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	63, 287
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	5 cut(s)	29, 170, 194, 224, 420
FaiI	YATR	6 cut(s)	27, 127, 168, 192, 222, 418
FatI	CATG	5 cut(s)	25, 166, 190, 220, 416
Fnu4HI	GCNGC	8 cut(s)	357, 360, 363, 393, 423, 447, 458, 467
FriOI	GRGCYC	2 cut(s)	63, 287
Fsp4HI	GCNGC	8 cut(s)	357, 360, 363, 393, 423, 447, 458, 467
FspBI	CTAG	5 cut(s)	147, 215, 338, 348, 353
FspI	TGCGCA	1 cut(s)	133
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	8 cut(s)	357, 360, 363, 393, 423, 447, 458, 467
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	197, 236
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	29, 170, 194, 224, 420
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	310, 318
Hpy188I	TCNGA	2 cut(s)	65, 79
Hpy188III	TCNNGA	5 cut(s)	110, 142, 215, 221, 230
HpyCH4III	ACNGT	2 cut(s)	330, 403
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	6 cut(s)	334, 388, 422, 438, 466, 493
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 176, 353, 362, 389, 463, 466
HpyF3I	CTNAG	2 cut(s)	62, 407
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	29, 170, 194, 224, 420
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	90, 217, 495
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	4 cut(s)	58, 160, 282, 524
Lsp1109I	GCAGC	6 cut(s)	346, 349, 379, 434, 444, 478
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	5 cut(s)	147, 215, 338, 348, 353
MaeII	ACGT	1 cut(s)	204
MalI	GATC	3 cut(s)	92, 219, 497
MboI	GATC	3 cut(s)	90, 217, 495
MboII	GAAGA	3 cut(s)	100, 203, 301
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	63, 287
MluCI	AATT	4 cut(s)	5, 267, 305, 509
MnlI	CCTC	4 cut(s)	61, 174, 187, 226
MseI	TTAA	5 cut(s)	21, 32, 266, 270, 507
MslI	CAYNNNNRTG	2 cut(s)	417, 488
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	370
MwoI	GCNNNNNNNGC	7 cut(s)	131, 176, 353, 362, 389, 463, 466
NdeII	GATC	3 cut(s)	90, 217, 495
NlaIII	CATG	5 cut(s)	29, 170, 194, 224, 420
NlaIV	GGNNCC	3 cut(s)	140, 162, 284
NsbI	TGCGCA	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	417
PacI	TTAATTAA	1 cut(s)	270
PagI	TCATGA	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	8 cut(s)	358, 361, 364, 394, 424, 448, 459, 468
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	140, 162, 284
PspPI	GGNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	1 cut(s)	90
RseI	CAYNNNNRTG	2 cut(s)	417, 488
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	5 cut(s)	21, 32, 266, 270, 507
SatI	GCNGC	8 cut(s)	357, 360, 363, 393, 423, 447, 458, 467
Sau3AI	GATC	3 cut(s)	90, 217, 495
Sau96I	GGNCC	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	63, 287
SetI	ASST	6 cut(s)	42, 63, 207, 323, 339, 521
SfaNI	GCATC	1 cut(s)	447
SfcI	CTRYAG	2 cut(s)	399, 464
SmiMI	CAYNNNNRTG	2 cut(s)	417, 488
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	4 cut(s)	5, 267, 305, 509
SsiI	CCGC	2 cut(s)	357, 447
SspMI	CTAG	5 cut(s)	147, 215, 338, 348, 353
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	330, 403
TaiI	ACGT	1 cut(s)	207
TasI	AATT	4 cut(s)	5, 267, 305, 509
TauI	GCSGC	2 cut(s)	359, 449
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	5 cut(s)	21, 32, 266, 270, 507
Tru9I	TTAA	5 cut(s)	21, 32, 266, 270, 507
TseI	GCWGC	6 cut(s)	359, 362, 392, 422, 457, 466
TspDTI	ATGAA	1 cut(s)	237
XapI	RAATTY	2 cut(s)	305, 509
XbaI	TCTAGA	1 cut(s)	214
XspI	CTAG	5 cut(s)	147, 215, 338, 348, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.