Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Forward (+)

70831556 .. 70832695

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGGAAATTGCATCAAGATTTACTAGACCTGCGCGGTCATTTTGAGAAGTTAGTACTAGAGCTTCAAAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGATCTTGAGAAACAACTTGACGAGAGCGAAAACAAAAGGGAAGAGCTTAACAAGCTAGTCCTGGACTATGAAGGTAATATCAAGGATCTTAAGGATGATCTTGAGCAACGTGAAGCTCAAACAAAGGATCCTAAGAATAGTGTTGATCAGAGTGAAGATGGCATTAAGAAAGAACTTGATCAGGTTGGCTTTTATGAGTCGAGGATTGAAAATATGACCAAAGAGCGTGATGGCTTAGTTAACAAGTTGAAAAGCGTTGGAGCAGAGCTAAAGGAAGCCCAAGAGGACTTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAACATAGCACTGACGAATGAAATTCTCGCAAAAGAATGCCAGGACTCCACTTGCAAATACAACCAAGCTTTGAAGGAGCGAGACGCAGCCTTGAGTGATCTGAATAACCTGGGAGTAGAGCTAGAGGAGGTTCGAAAGGACTTGTCCGAGTCCCAGGCTAACTTGGAATTAGGCAAGAAGGTTTGGGAGGCTGAGAGCATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAGGATGGAACTGACTAAAAAGCTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAAAGGAGCTCAGAGAGGAGTTAACGCATATTGCTCAGGGTGTTATAGTATATATGAAACATGGTGTATTGTTCATAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

287

Amino Acids

33.22

Weight (kDa)

4.98

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	39
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	3 cut(s)	195, 224, 237
AcsI	RAATTY	1 cut(s)	498
AfaI	GTAC	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	68, 311, 352, 550
AjnI	CCWGG	4 cut(s)	162, 516, 585, 630
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	1 cut(s)	552
AlwI	GGATC	3 cut(s)	195, 224, 237
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	36
AsuII	TTCGAA	1 cut(s)	610
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	792
BarI	GAAGNNNNNNTAC	2 cut(s)	48, 80
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	254, 326, 724
BciT130I	CCWGG	4 cut(s)	164, 518, 587, 632
BclI	TGATCA	2 cut(s)	247, 280
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	4 cut(s)	26, 59, 158, 599
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	39
BglII	AGATCT	1 cut(s)	103
BisI	GCNGC	1 cut(s)	564
BlsI	GCNGC	1 cut(s)	565
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	4 cut(s)	164, 518, 587, 632
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	164, 518, 587, 632
BmsI	GCATC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu14I	TTCGAA	1 cut(s)	610
BpuEI	CTTGAG	4 cut(s)	72, 128, 224, 589
BsaJI	CCNNGG	2 cut(s)	586, 630
Bse1I	ACTGG	2 cut(s)	438, 687
BseBI	CCWGG	4 cut(s)	164, 518, 587, 632
BseDI	CCNNGG	2 cut(s)	586, 630
BseGI	GGATG	2 cut(s)	202, 735
BseMII	CTCAG	7 cut(s)	429, 465, 660, 678, 714, 805, 830
BseNI	ACTGG	2 cut(s)	438, 687
BseRI	GAGGAG	2 cut(s)	617, 812
BseXI	GCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	613
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	518
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
BspACI	CCGC	1 cut(s)	36
BspCNI	CTCAG	7 cut(s)	430, 466, 661, 679, 715, 804, 829
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	195, 224, 237
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	438, 687
BssECI	CCNNGG	2 cut(s)	586, 630
BssMI	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
Bst2UI	CCWGG	4 cut(s)	164, 518, 587, 632
Bst6I	CTCTTC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	610
BstDEI	CTNAG	9 cut(s)	234, 337, 438, 474, 669, 687, 723, 791, 816
BstF5I	GGATG	2 cut(s)	202, 735
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	7 cut(s)	106, 190, 202, 232, 250, 283, 577
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	4 cut(s)	164, 518, 587, 632
BstSCI	CCNGG	4 cut(s)	162, 516, 585, 630
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	575
BstX2I	RGATCY	3 cut(s)	103, 187, 229
BstYI	RGATCY	3 cut(s)	103, 187, 229
BtsCI	GGATG	2 cut(s)	202, 735
BtsIMutI	CAGTG	3 cut(s)	431, 485, 680
BveI	ACCTGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	755, 842
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	9 cut(s)	234, 337, 438, 474, 669, 687, 723, 791, 816
DpnI	GATC	7 cut(s)	105, 189, 201, 231, 249, 282, 576
DpnII	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	792
Eco53kI	GAGCTC	1 cut(s)	790
EcoICRI	GAGCTC	1 cut(s)	790
EcoRII	CCWGG	4 cut(s)	162, 516, 585, 630
EcoT38I	GRGCYC	1 cut(s)	792
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	2 cut(s)	758, 845
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	2 cut(s)	754, 841
FbaI	TGATCA	2 cut(s)	247, 280
Fnu4HI	GCNGC	1 cut(s)	564
FokI	GGATG	2 cut(s)	209, 742
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	4 cut(s)	26, 59, 158, 599
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	564
HgaI	GACGC	1 cut(s)	569
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	758, 845
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	2 cut(s)	343, 804
HindII	GTYRAC	2 cut(s)	343, 804
HindIII	AAGCTT	2 cut(s)	543, 746
HinfI	GANTC	3 cut(s)	299, 521, 626
HpaI	GTTAAC	2 cut(s)	343, 804
Hpy166II	GTNNAC	2 cut(s)	343, 804
Hpy188I	TCNGA	4 cut(s)	252, 579, 625, 794
Hpy188III	TCNNGA	4 cut(s)	17, 89, 107, 203
Hpy8I	GTNNAC	2 cut(s)	343, 804
HpyAV	CCTTC	4 cut(s)	167, 400, 544, 649
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	4 cut(s)	13, 455, 531, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	9 cut(s)	234, 337, 438, 474, 669, 687, 723, 791, 816
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	758, 845
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	2 cut(s)	247, 280
KspAI	GTTAAC	2 cut(s)	343, 804
Kzo9I	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	3 cut(s)	362, 553, 787
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	4 cut(s)	26, 59, 158, 599
MaeII	ACGT	1 cut(s)	211
MalI	GATC	7 cut(s)	105, 189, 201, 231, 249, 282, 576
MboI	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
MboII	GAAGA	2 cut(s)	155, 269
MflI	RGATCY	3 cut(s)	103, 187, 229
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	4 cut(s)	8, 395, 498, 644
MlyI	GAGTC	3 cut(s)	308, 515, 635
MmeI	TCCRAC	1 cut(s)	340
MseI	TTAA	8 cut(s)	80, 150, 192, 267, 342, 750, 761, 803
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	4 cut(s)	164, 518, 587, 632
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	4 cut(s)	164, 518, 587, 632
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
NlaIII	CATG	2 cut(s)	758, 845
NlaIV	GGNNCC	1 cut(s)	231
NspV	TTCGAA	1 cut(s)	610
PciSI	GCTCTTC	1 cut(s)	138
PctI	GAATGC	1 cut(s)	518
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	3 cut(s)	307, 515, 634
PpsI	GAGTC	3 cut(s)	307, 515, 634
Psp124BI	GAGCTC	1 cut(s)	792
Psp6I	CCWGG	4 cut(s)	162, 516, 585, 630
PspGI	CCWGG	4 cut(s)	162, 516, 585, 630
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	3 cut(s)	103, 187, 229
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	8 cut(s)	80, 150, 192, 267, 342, 750, 761, 803
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	7 cut(s)	103, 187, 199, 229, 247, 280, 574
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	3 cut(s)	308, 515, 635
ScrFI	CCNGG	4 cut(s)	164, 518, 587, 632
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	610
SmlI	CTYRAG	5 cut(s)	87, 107, 191, 203, 568
SmoI	CTYRAG	5 cut(s)	87, 107, 191, 203, 568
Sse9I	AATT	4 cut(s)	8, 395, 498, 644
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	4 cut(s)	26, 59, 158, 599
SstI	GAGCTC	1 cut(s)	792
StyD4I	CCNGG	4 cut(s)	162, 516, 585, 630
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	302, 610
TasI	AATT	4 cut(s)	8, 395, 498, 644
TatI	WGTACW	1 cut(s)	55
Tru1I	TTAA	8 cut(s)	80, 150, 192, 267, 342, 750, 761, 803
Tru9I	TTAA	8 cut(s)	80, 150, 192, 267, 342, 750, 761, 803
TscAI	CASTG	3 cut(s)	438, 492, 687
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	4 cut(s)	186, 510, 844, 851
TspRI	CASTG	3 cut(s)	438, 492, 687
Vha464I	CTTAAG	1 cut(s)	191
XapI	RAATTY	1 cut(s)	498
XspI	CTAG	4 cut(s)	26, 59, 158, 599
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.