Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

71351772 .. 71353112

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTTCCAGGAGAACTTCATCTTGGGAAATTGCATCAAGATTTACTGGACCTCCGCGGTCATTTTGAGAAGTTAGTCCCTGAGCTTCAAAAATCACTGTTAAAATCTCAAGAGCAAAAGAAAGGTCTTGAGAAACAACTTGAGGAGAGTGAAAACAAAAGGAAAGAGCTTAACAAGGTAGTCTTAGACTATGAACATCATATCAAGGATCTTAAGAATGATCTTGAGCAACGTGAAGCTCAAATAAAGGATCTTAAGAATAGTGTTGATCAGAGTGAAGATGATATTAAGAAAGAAATTGATCAGATTGGCTTTTATGAGTCGAGGATCGGAAATATGACCAAAGAGCATGATGGCTTAATTAACAAGTTGAACATCATTGGAGCAGAGCTGAAGGAAGTGCAAGAGGACCTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCCATGGCTGAGAGGCTTACTAATGCAGAGGAGATGTGGGAGGCTGAGAAGATAGCACTGACAAACGAAATTCTCACAAAAGAGGGCCAGGACTCCACTTGCAAATACAACCAAGCTTTGAAGGAGCGAGATGCAGCCTTGAGTGATCTGAAAAACCTGGGAGTAGAGCTAGAGGATGTTCAAAAGGACTTGTTAGATTCCCGGGCCGACTTGGAATTAAGCAAGAAGGTTTGGGAGGCTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGAAGGCTGAGAGGATGGAAATGACTAAAAAACTTATCCACGAGTTAAACAAGTTTGAAATAGAGATAAAGGAGCTCAGAGAGGAGTTGTCTGACTTCGAGAAGATCCACAAGCAGCACATTCAAGAAAATGAGAATGCATATTGCGCAGGGTACCTGACTGGTTGGTTCAAGGAGCCTCATGCCTACATTGCCCTTCCAAGCCATGAGGCAAAGGAGGTTACTCTTCTAGATCATGAACCTTTGGAGGCCACATCTCCACTCTCTCACACTTGTGCCTTAATTGAACTTTTCGGAAGTGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

349

Amino Acids

40.29

Weight (kDa)

5.03

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	883
Acc65I	GGTACC	1 cut(s)	888
AccB1I	GGYRCC	1 cut(s)	888
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	55, 57
AclWI	GGATC	5 cut(s)	216, 258, 335, 835, 1034
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	890
AflII	CTTAAG	2 cut(s)	212, 254
AgsI	TTSAA	8 cut(s)	89, 373, 571, 632, 794, 860, 907, 1022
AjnI	CCWGG	4 cut(s)	7, 411, 537, 606
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	1008
AluBI	AGCT	7 cut(s)	85, 169, 239, 391, 566, 619, 811
AluI	AGCT	7 cut(s)	85, 169, 239, 391, 566, 619, 811
Alw21I	GWGCWC	1 cut(s)	813
AlwI	GGATC	5 cut(s)	216, 258, 335, 835, 1034
Ama87I	CYCGRG	1 cut(s)	651
AoxI	GGCC	3 cut(s)	535, 654, 984
ApeKI	GCWGC	2 cut(s)	584, 850
ApoI	RAATTY	1 cut(s)	519
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
Asp718I	GGTACC	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	884
AspS9I	GGNCC	4 cut(s)	49, 409, 535, 654
AsuC2I	CCSGG	2 cut(s)	652, 653
AvaI	CYCGRG	1 cut(s)	651
AvaII	GGWCC	2 cut(s)	49, 409
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	1 cut(s)	813
BauI	CACGAG	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	813
BbvI	GCAGC	2 cut(s)	596, 862
BccI	CCATC	2 cut(s)	347, 745
BciT130I	CCWGG	4 cut(s)	9, 413, 539, 608
BclI	TGATCA	2 cut(s)	268, 301
BcnI	CCSGG	2 cut(s)	652, 653
BfaI	CTAG	2 cut(s)	620, 965
BfrI	CTTAAG	2 cut(s)	212, 254
BisI	GCNGC	2 cut(s)	585, 851
BlsI	GCNGC	2 cut(s)	586, 852
Bme1390I	CCNGG	6 cut(s)	9, 413, 539, 608, 652, 653
Bme18I	GGWCC	2 cut(s)	49, 409
BmeT110I	CYCGRG	1 cut(s)	651
BmgT120I	GGNCC	4 cut(s)	49, 409, 535, 654
BmiI	GGNNCC	3 cut(s)	6, 890, 912
BmrFI	CCNGG	6 cut(s)	9, 413, 539, 608, 652, 653
BmsI	GCATC	2 cut(s)	43, 571
Bpu10I	CCTNAGC	1 cut(s)	81
BpuEI	CTTGAG	5 cut(s)	93, 149, 161, 245, 610
BpuMI	CCSGG	2 cut(s)	652, 653
BsaJI	CCNNGG	4 cut(s)	55, 453, 607, 651
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bse1I	ACTGG	3 cut(s)	51, 708, 901
Bse3DI	GCAATG	1 cut(s)	924
BseBI	CCWGG	4 cut(s)	9, 413, 539, 608
BseDI	CCNNGG	4 cut(s)	55, 453, 607, 651
BseGI	GGATG	2 cut(s)	631, 756
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	7 cut(s)	72, 450, 486, 681, 699, 735, 826
BseNI	ACTGG	3 cut(s)	51, 708, 901
BseRI	GAGGAG	3 cut(s)	158, 494, 833
BseXI	GCAGC	2 cut(s)	596, 862
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	537, 656, 986
BshNI	GGYRCC	1 cut(s)	888
BsiHKAI	GWGCWC	1 cut(s)	813
BsiHKCI	CYCGRG	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	652
BslFI	GGGAC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	537, 656, 986
BsoBI	CYCGRG	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	55, 57
BspANI	GGCC	3 cut(s)	537, 656, 986
BspCNI	CTCAG	7 cut(s)	73, 451, 487, 682, 700, 736, 825
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	970
BspLI	GGNNCC	3 cut(s)	6, 890, 912
BspPI	GGATC	5 cut(s)	216, 258, 335, 835, 1034
BspT107I	GGYRCC	1 cut(s)	888
BspTI	CTTAAG	2 cut(s)	212, 254
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	3 cut(s)	51, 708, 901
BssECI	CCNNGG	4 cut(s)	55, 453, 607, 651
BssSI	CACGAG	1 cut(s)	776
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	776
Bst2UI	CCWGG	4 cut(s)	9, 413, 539, 608
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	966
BstAFI	CTTAAG	2 cut(s)	212, 254
BstDEI	CTNAG	8 cut(s)	81, 184, 459, 495, 690, 708, 744, 812
BstDSI	CCRYGG	2 cut(s)	55, 453
BstF5I	GGATG	2 cut(s)	631, 756
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	884
BstMWI	GCNNNNNNNGC	2 cut(s)	881, 926
BstNI	CCWGG	4 cut(s)	9, 413, 539, 608
BstSCI	CCNGG	6 cut(s)	7, 411, 537, 606, 650, 651
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	596, 862
BstX2I	RGATCY	3 cut(s)	208, 250, 840
BstYI	RGATCY	3 cut(s)	208, 250, 840
BsuRI	GGCC	3 cut(s)	537, 656, 986
BtgI	CCRYGG	2 cut(s)	55, 453
BtsCI	GGATG	2 cut(s)	631, 756
BtsIMutI	CAGTG	3 cut(s)	95, 506, 701
CciI	TCATGA	1 cut(s)	970
CfoI	GCGC	1 cut(s)	884
Cfr13I	GGNCC	4 cut(s)	49, 409, 535, 654
Cfr42I	CCGCGG	1 cut(s)	58
Cfr9I	CCCGGG	1 cut(s)	651
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	5 cut(s)	350, 454, 917, 941, 971
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	8 cut(s)	81, 184, 459, 495, 690, 708, 744, 812
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	813
Eco47I	GGWCC	2 cut(s)	49, 409
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	811
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	4 cut(s)	7, 411, 537, 606
EcoT14I	CCWWGG	1 cut(s)	453
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	353, 457, 920, 944, 974
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	5 cut(s)	349, 453, 916, 940, 970
FbaI	TGATCA	2 cut(s)	268, 301
Fnu4HI	GCNGC	2 cut(s)	585, 851
FokI	GGATG	2 cut(s)	638, 763
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	2 cut(s)	585, 851
FspBI	CTAG	2 cut(s)	620, 965
FspI	TGCGCA	1 cut(s)	883
GlaI	GCGC	1 cut(s)	883
GluI	GCNGC	2 cut(s)	585, 851
HaeIII	GGCC	3 cut(s)	537, 656, 986
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	884
Hin1II	CATG	5 cut(s)	353, 457, 920, 944, 974
Hin6I	GCGC	1 cut(s)	882
HinP1I	GCGC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	3 cut(s)	320, 542, 647
HpaII	CCGG	1 cut(s)	652
Hpy188I	TCNGA	7 cut(s)	273, 306, 332, 600, 815, 829, 1031
Hpy188III	TCNNGA	8 cut(s)	38, 110, 128, 224, 835, 860, 965, 971
HpyAV	CCTTC	6 cut(s)	388, 421, 565, 670, 733, 941
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	7 cut(s)	34, 403, 476, 552, 584, 725, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	881, 926
HpyF3I	CTNAG	8 cut(s)	81, 184, 459, 495, 690, 708, 744, 812
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	5 cut(s)	353, 457, 920, 944, 974
HspAI	GCGC	1 cut(s)	882
KpnI	GGTACC	1 cut(s)	892
Ksp22I	TGATCA	2 cut(s)	268, 301
KspI	CCGCGG	1 cut(s)	58
LmnI	GCTCC	4 cut(s)	383, 574, 808, 910
Lsp1109I	GCAGC	2 cut(s)	596, 862
LweI	GCATC	2 cut(s)	43, 571
MaeI	CTAG	2 cut(s)	620, 965
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	955
MboII	GAAGA	4 cut(s)	290, 511, 850, 953
MflI	RGATCY	3 cut(s)	208, 250, 840
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	7 cut(s)	29, 297, 360, 416, 519, 665, 1017
MlyI	GAGTC	2 cut(s)	329, 536
Mph1103I	ATGCAT	1 cut(s)	877
MslI	CAYNNNNRTG	1 cut(s)	1008
MspA1I	CMGCKG	1 cut(s)	57
MspCI	CTTAAG	2 cut(s)	212, 254
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	6 cut(s)	9, 413, 539, 608, 652, 653
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	4 cut(s)	9, 413, 539, 608
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	881, 926
NciI	CCSGG	2 cut(s)	652, 653
NcoI	CCATGG	1 cut(s)	453
NlaIII	CATG	5 cut(s)	353, 457, 920, 944, 974
NlaIV	GGNNCC	3 cut(s)	6, 890, 912
NsbI	TGCGCA	1 cut(s)	883
NsiI	ATGCAT	1 cut(s)	877
OliI	CACNNNNGTG	1 cut(s)	1008
PacI	TTAATTAA	1 cut(s)	363
PagI	TCATGA	1 cut(s)	970
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	1 cut(s)	647
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	586, 852
PleI	GAGTC	2 cut(s)	328, 536
PpsI	GAGTC	2 cut(s)	328, 536
PpuMI	RGGWCCY	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	813
Psp5II	RGGWCCY	1 cut(s)	409
Psp6I	CCWGG	4 cut(s)	7, 411, 537, 606
PspGI	CCWGG	4 cut(s)	7, 411, 537, 606
PspN4I	GGNNCC	3 cut(s)	6, 890, 912
PspPI	GGNCC	4 cut(s)	49, 409, 535, 654
PspPPI	RGGWCCY	1 cut(s)	409
PsuI	RGATCY	3 cut(s)	208, 250, 840
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	1 cut(s)	1008
SacI	GAGCTC	1 cut(s)	813
SacII	CCGCGG	1 cut(s)	58
SatI	GCNGC	2 cut(s)	585, 851
Sau96I	GGNCC	4 cut(s)	49, 409, 535, 654
SchI	GAGTC	2 cut(s)	329, 536
ScrFI	CCNGG	6 cut(s)	9, 413, 539, 608, 652, 653
SduI	GDGCHC	1 cut(s)	813
SfaNI	GCATC	2 cut(s)	43, 571
Sfr303I	CCGCGG	1 cut(s)	58
SgrBI	CCGCGG	1 cut(s)	58
SinI	GGWCC	2 cut(s)	49, 409
SmaI	CCCGGG	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	1008
SmlI	CTYRAG	7 cut(s)	108, 128, 140, 212, 224, 254, 589
SmoI	CTYRAG	7 cut(s)	108, 128, 140, 212, 224, 254, 589
Sse9I	AATT	7 cut(s)	29, 297, 360, 416, 519, 665, 1017
SsiI	CCGC	2 cut(s)	55, 57
SspMI	CTAG	2 cut(s)	620, 965
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	6 cut(s)	7, 411, 537, 606, 650, 651
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	323, 834
TasI	AATT	7 cut(s)	29, 297, 360, 416, 519, 665, 1017
TfiI	GAWTC	1 cut(s)	647
TscAI	CASTG	3 cut(s)	102, 513, 708
TseI	GCWGC	2 cut(s)	584, 850
TspDTI	ATGAA	3 cut(s)	8, 207, 987
TspMI	CCCGGG	1 cut(s)	651
TspRI	CASTG	3 cut(s)	102, 513, 708
Vha464I	CTTAAG	2 cut(s)	212, 254
VpaK11BI	GGWCC	2 cut(s)	49, 409
XapI	RAATTY	1 cut(s)	519
XbaI	TCTAGA	1 cut(s)	964
XmaI	CCCGGG	1 cut(s)	651
XspI	CTAG	2 cut(s)	620, 965
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.