Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

71319590 .. 71321065

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035766

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGTACAACTGGGTGTTCTGGGGTCTTGCATCTTCAAGGCTCAAAATAAGCAAAACAAAGATCTTGAGAAACAACTTGAGGAGAGTGAAAACAAAAGGAAAGAGCTTAACAAGGTAGTCTTAGACTATGAACATCATGTCAAGGATCTTAAGAACGATCTTGAGCAACGTGGAGCTCAAACAAAGGATCCTAAGAATAGTGTTGATCAGAGTGAAGATGATGTTAAGAAAGAACTCGATCAGTCGAGGATTGAAAATATGACTAAAGAGCACGATGGCTTAATTAACAAGTTGAACAGCATCGGAGCAGAGCCAAAGGAAGCGCAAGAGGGCCTGGAATTAGGCAAGAAGGTTTGGGATGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGCTGGTGTGGGAGGCTGAGAAGATAGCACTGACGTATGAAATTCTCACAAAAGTGCACCAGGACTCTACTTACAAATACAACCAAGCTTTGAAGAAGCAAGACGCGGCCTTGAGTGTTCTGAAAAACCTGGGAGTAGGGCTAGAAGAGGTCCGAAAGGACTGGTCAGAGTCCCAGGCTGACTTGGAATTACGCAAGAAGTTTGGGAGTCTGATCGAGAGGATAGCAGTGGCTGAGAGGCTTACTAATGCAAAGAGGGTGTGGGAGGCTGAGAGAATGGAATTGAATAACAAACTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAATGAAGCTCAGAGAGGAGTTGTCTGACATGGAGAAGATCCACAAGCAGCACATTCAAGAAAATGAGAACGCATATTGCGCAGGGTACCTGACTGTTTGGTTCAAGGAGCCTCATGCCTACATCGCCCTGCCAAGCCATGAGGCCAAGGACGTTGCTCTTCTAGATCATGAACCCCTGGAGGCCCCATCTCCACTCTCTCACACTTATTCCTTAATTAAACTTTTCGAAAGTACTGATCCATACGTGCTGATATGCTACCTTTGGGATGCATCATCTGTATATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

339

Amino Acids

39.01

Weight (kDa)

5.52

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	808
Acc65I	GGTACC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	813
AccII	CGCG	1 cut(s)	506
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	5 cut(s)	153, 182, 195, 760, 959
AcsI	RAATTY	1 cut(s)	441
AfaI	GTAC	3 cut(s)	6, 815, 961
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	7 cut(s)	37, 254, 295, 493, 685, 785, 832
AjnI	CCWGG	5 cut(s)	333, 459, 528, 573, 903
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	5 cut(s)	106, 176, 403, 488, 736
AluI	AGCT	5 cut(s)	106, 176, 403, 488, 736
Alw21I	GWGCWC	3 cut(s)	178, 273, 459
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	5 cut(s)	153, 182, 195, 760, 959
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	4 cut(s)	331, 507, 870, 909
ApaLI	GTGCAC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	1 cut(s)	441
Asp718I	GGTACC	1 cut(s)	813
AspLEI	GCGC	2 cut(s)	325, 809
AspS9I	GGNCC	3 cut(s)	331, 550, 910
AsuII	TTCGAA	1 cut(s)	954
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	3 cut(s)	178, 273, 459
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	2 cut(s)	269, 922
BciT130I	CCWGG	5 cut(s)	335, 461, 530, 575, 905
BclI	TGATCA	1 cut(s)	205
BfaI	CTAG	2 cut(s)	542, 890
BfrI	CTTAAG	1 cut(s)	149
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	2 cut(s)	507, 776
BlsI	GCNGC	2 cut(s)	508, 777
BmcAI	AGTACT	1 cut(s)	961
Bme1390I	CCNGG	5 cut(s)	335, 461, 530, 575, 905
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	331, 550, 910
BmiI	GGNNCC	4 cut(s)	189, 815, 837, 912
BmrFI	CCNGG	5 cut(s)	335, 461, 530, 575, 905
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	4 cut(s)	39, 309, 985, 1007
BmuI	ACTGGG	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	926
Bpu14I	TTCGAA	1 cut(s)	954
BpuEI	CTTGAG	4 cut(s)	86, 98, 182, 532
BsaAI	YACGTR	1 cut(s)	973
BsaJI	CCNNGG	4 cut(s)	529, 573, 873, 903
Bse1I	ACTGG	3 cut(s)	15, 381, 566
BseBI	CCWGG	5 cut(s)	335, 461, 530, 575, 905
BseDI	CCNNGG	4 cut(s)	529, 573, 873, 903
BseGI	GGATG	2 cut(s)	364, 1000
BseMII	CTCAG	5 cut(s)	372, 408, 624, 660, 751
BseNI	ACTGG	3 cut(s)	15, 381, 566
BseRI	GAGGAG	2 cut(s)	95, 758
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	1 cut(s)	787
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	4 cut(s)	333, 509, 872, 911
BshNI	GGYRCC	1 cut(s)	813
BsiHKAI	GWGCWC	3 cut(s)	178, 273, 459
BslFI	GGGAC	1 cut(s)	556
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	4 cut(s)	333, 509, 872, 911
Bsp119I	TTCGAA	1 cut(s)	954
Bsp1286I	GDGCHC	3 cut(s)	178, 273, 459
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	4 cut(s)	333, 509, 872, 911
BspCNI	CTCAG	5 cut(s)	373, 409, 625, 661, 750
BspFNI	CGCG	1 cut(s)	506
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	4 cut(s)	189, 815, 837, 912
BspPI	GGATC	5 cut(s)	153, 182, 195, 760, 959
BspQI	GCTCTTC	1 cut(s)	891
BspT104I	TTCGAA	1 cut(s)	954
BspT107I	GGYRCC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	149
BsrI	ACTGG	3 cut(s)	15, 381, 566
BssECI	CCNNGG	4 cut(s)	529, 573, 873, 903
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	5 cut(s)	335, 461, 530, 575, 905
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	2 cut(s)	540, 891
BstAFI	CTTAAG	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	954
BstDEI	CTNAG	7 cut(s)	121, 192, 381, 417, 633, 669, 737
BstF5I	GGATG	2 cut(s)	364, 1000
BstFNI	CGCG	1 cut(s)	506
BstHHI	GCGC	2 cut(s)	325, 809
BstMWI	GCNNNNNNNGC	2 cut(s)	806, 851
BstNI	CCWGG	5 cut(s)	335, 461, 530, 575, 905
BstSCI	CCNGG	5 cut(s)	333, 459, 528, 573, 903
BstSLI	GKGCMC	1 cut(s)	459
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	787
BstX2I	RGATCY	4 cut(s)	61, 145, 187, 765
BstYI	RGATCY	4 cut(s)	61, 145, 187, 765
BsuRI	GGCC	4 cut(s)	333, 509, 872, 911
BtgZI	GCGATG	1 cut(s)	835
BtsCI	GGATG	2 cut(s)	364, 1000
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	374, 428, 633
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	2 cut(s)	325, 809
Cfr13I	GGNCC	3 cut(s)	331, 550, 910
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	5, 814, 960
CviAII	CATG	6 cut(s)	137, 701, 757, 842, 866, 896
CviQI	GTAC	3 cut(s)	5, 814, 960
DdeI	CTNAG	7 cut(s)	121, 192, 381, 417, 633, 669, 737
Eam1104I	CTCTTC	2 cut(s)	540, 891
EarI	CTCTTC	2 cut(s)	540, 891
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	873
Eco24I	GRGCYC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	331, 910
EcoRII	CCWGG	5 cut(s)	333, 459, 528, 573, 903
EcoT14I	CCWWGG	1 cut(s)	873
EcoT22I	ATGCAT	1 cut(s)	1000
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	6 cut(s)	140, 704, 760, 845, 869, 899
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	6 cut(s)	136, 700, 756, 841, 865, 895
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	507, 776
FokI	GGATG	2 cut(s)	371, 1007
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	507, 776
FspBI	CTAG	2 cut(s)	542, 890
FspI	TGCGCA	1 cut(s)	808
GlaI	GCGC	2 cut(s)	324, 808
GluI	GCNGC	2 cut(s)	507, 776
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	4 cut(s)	333, 509, 872, 911
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	2 cut(s)	325, 809
Hin1II	CATG	6 cut(s)	140, 704, 760, 845, 869, 899
Hin6I	GCGC	2 cut(s)	323, 807
HinP1I	GCGC	2 cut(s)	323, 807
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	464, 569, 607
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	8 cut(s)	210, 305, 522, 554, 568, 612, 740, 754
Hpy188III	TCNNGA	6 cut(s)	65, 161, 616, 785, 890, 896
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	4 cut(s)	169, 434, 879, 972
HpyCH4V	TGCA	5 cut(s)	30, 398, 457, 650, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	806, 851
HpyF3I	CTNAG	7 cut(s)	121, 192, 381, 417, 633, 669, 737
HpySE526I	ACGT	4 cut(s)	169, 434, 879, 972
Hsp92II	CATG	6 cut(s)	140, 704, 760, 845, 869, 899
HspAI	GCGC	2 cut(s)	323, 807
KpnI	GGTACC	1 cut(s)	817
Ksp22I	TGATCA	1 cut(s)	205
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	3 cut(s)	173, 305, 835
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	4 cut(s)	39, 309, 985, 1007
MaeI	CTAG	2 cut(s)	542, 890
MaeII	ACGT	4 cut(s)	169, 434, 879, 972
MboII	GAAGA	7 cut(s)	25, 227, 433, 505, 557, 775, 878
MflI	RGATCY	4 cut(s)	61, 145, 187, 765
MhlI	GDGCHC	3 cut(s)	178, 273, 459
MluCI	AATT	7 cut(s)	282, 338, 441, 587, 680, 942, 1012
MlyI	GAGTC	3 cut(s)	458, 578, 616
Mph1103I	ATGCAT	1 cut(s)	1000
MseI	TTAA	9 cut(s)	108, 150, 225, 281, 285, 696, 707, 941, 945
MslI	CAYNNNNRTG	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	149
MspR9I	CCNGG	5 cut(s)	335, 461, 530, 575, 905
MvaI	CCWGG	5 cut(s)	335, 461, 530, 575, 905
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	2 cut(s)	806, 851
NlaIII	CATG	6 cut(s)	140, 704, 760, 845, 869, 899
NlaIV	GGNNCC	4 cut(s)	189, 815, 837, 912
NsbI	TGCGCA	1 cut(s)	808
NsiI	ATGCAT	1 cut(s)	1000
NspV	TTCGAA	1 cut(s)	954
OliI	CACNNNNGTG	1 cut(s)	452
PacI	TTAATTAA	2 cut(s)	285, 945
PagI	TCATGA	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	891
PkrI	GCNGC	2 cut(s)	508, 777
PleI	GAGTC	3 cut(s)	458, 577, 615
PpsI	GAGTC	3 cut(s)	458, 577, 615
Ppu21I	YACGTR	1 cut(s)	973
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	5 cut(s)	333, 459, 528, 573, 903
PspGI	CCWGG	5 cut(s)	333, 459, 528, 573, 903
PspN4I	GGNNCC	4 cut(s)	189, 815, 837, 912
PspPI	GGNCC	3 cut(s)	331, 550, 910
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	4 cut(s)	61, 145, 187, 765
RsaI	GTAC	3 cut(s)	6, 815, 961
RsaNI	GTAC	3 cut(s)	5, 814, 960
RseI	CAYNNNNRTG	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	9 cut(s)	108, 150, 225, 281, 285, 696, 707, 941, 945
SatI	GCNGC	2 cut(s)	507, 776
Sau96I	GGNCC	3 cut(s)	331, 550, 910
ScaI	AGTACT	1 cut(s)	961
SchI	GAGTC	3 cut(s)	458, 578, 616
ScrFI	CCNGG	5 cut(s)	335, 461, 530, 575, 905
SduI	GDGCHC	3 cut(s)	178, 273, 459
SfaNI	GCATC	4 cut(s)	39, 309, 985, 1007
SfuI	TTCGAA	1 cut(s)	954
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	5 cut(s)	65, 77, 149, 161, 511
SmoI	CTYRAG	5 cut(s)	65, 77, 149, 161, 511
Sse9I	AATT	7 cut(s)	282, 338, 441, 587, 680, 942, 1012
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	2 cut(s)	542, 890
SstI	GAGCTC	1 cut(s)	178
StyD4I	CCNGG	5 cut(s)	333, 459, 528, 573, 903
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	4 cut(s)	172, 437, 882, 975
TaqI	TCGA	4 cut(s)	237, 245, 615, 954
TasI	AATT	7 cut(s)	282, 338, 441, 587, 680, 942, 1012
TatI	WGTACW	1 cut(s)	959
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	9 cut(s)	108, 150, 225, 281, 285, 696, 707, 941, 945
Tru9I	TTAA	9 cut(s)	108, 150, 225, 281, 285, 696, 707, 941, 945
TscAI	CASTG	3 cut(s)	381, 435, 633
TseI	GCWGC	1 cut(s)	775
TspDTI	ATGAA	4 cut(s)	144, 453, 746, 912
TspRI	CASTG	3 cut(s)	381, 435, 633
Vha464I	CTTAAG	1 cut(s)	149
VneI	GTGCAC	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	1 cut(s)	441
XbaI	TCTAGA	1 cut(s)	889
XspI	CTAG	2 cut(s)	542, 890
ZrmI	AGTACT	1 cut(s)	961
Zsp2I	ATGCAT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.