RLG00000035768

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002544
Physical Location & Seq
Reverse (-)
71337655 .. 71351464
13810 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035768

Sequence Viewer

Length: 981 bp
ATGGATAAGGAAAACTACATCGGGAAATTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGCTAAAATCTCAAGAGCAAAAGAAAGACCTGAGGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGCAAAATGTGAGGCTCAAAATAAAGAGCTTATCAATACAGTCTTAGACCAGCATACAGCCTTGTCAAGCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTGGATCAGGTTGGCTCTCATGAGTCGAGGAGTGAAATTACGACCAAAGAGCGCAATGACTTGATTAGCAAGTACAATTACAGCCAAGCATTGAAGCAGCGAGACTCAATTTTAGCAAAGTTGAACACCATTGGAGCAGAGCTACAGGAGGCACAAAATGACTTGGAATTAGGCAAGAAGGTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTTCTAATGCAAAGCAGGCATGGGAGGCTGAGAAGATAGCACTGATTGATAATATTTTGACAAAAGAGCGTCAGGACTCCACTTTCAAATACAACCAAGCTTTGAAGGAGCGAGACACAGCCTTGACTAAATGGGGTCCGAAAGGACTTGTCCAAGTCCGGGCTAAGTTGGAATTTGGTAAGAAGGTGTGGGAGGCTGAGAAAATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGAGATAAAGGAGATCAGAGAGGAGTTGTCTGACTTGGCCAAGATCCACGAGAAGCACATTCAAGAAAATGAGAATGCATATTGCGCAGGGTACCTGACTGGATGGTTCAGGGAGCCACATGAACATATTTCCCTGCGAAGCCATGAGGCCAAGGAAGTTACTCTTCCGGTTCATAAACCTCTGGAGGCCACATCTTCACTCTCTCATTCTCGTGCCTTAATTAGACGTTTCGGAAGTGCTGGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

327

Amino Acids

37.62

Weight (kDa)

8.25

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 817
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 1 cut(s) 822
AclWI GGATC 2 cut(s) 288, 769
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 2 cut(s) 26, 665
AfaI GTAC 3 cut(s) 72, 350, 824
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 5 cut(s) 370, 400, 580, 598, 794
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 8 cut(s) 92, 146, 202, 243, 418, 479, 593, 715
AluI AGCT 8 cut(s) 92, 146, 202, 243, 418, 479, 593, 715
Alw26I GTCTC 2 cut(s) 372, 600
AlwI GGATC 2 cut(s) 288, 769
AoxI GGCC 3 cut(s) 768, 879, 918
ApeKI GCWGC 2 cut(s) 82, 373
ApoI RAATTY 2 cut(s) 26, 665
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 2 cut(s) 330, 818
AspS9I GGNCC 3 cut(s) 46, 629, 974
AsuC2I CCSGG 1 cut(s) 653
AvaII GGWCC 3 cut(s) 46, 629, 974
AxyI CCTNAGG 1 cut(s) 125
BalI TGGCCA 1 cut(s) 770
BanI GGYRCC 1 cut(s) 822
BauI CACGAG 2 cut(s) 779, 942
BbvI GCAGC 2 cut(s) 94, 385
BccI CCATC 1 cut(s) 828
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 372, 600
BfmI CTRYAG 1 cut(s) 419
BglII AGATCT 1 cut(s) 157
BisI GCNGC 2 cut(s) 83, 374
BlsI GCNGC 2 cut(s) 84, 375
Bme1390I CCNGG 2 cut(s) 59, 653
Bme18I GGWCC 3 cut(s) 46, 629, 974
BmgT120I GGNCC 3 cut(s) 46, 629, 974
BmiI GGNNCC 3 cut(s) 630, 824, 846
BmrFI CCNGG 2 cut(s) 59, 653
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 935
BpuEI CTTGAG 3 cut(s) 90, 152, 182
BpuMI CCSGG 1 cut(s) 653
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 882
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse1I ACTGG 3 cut(s) 48, 282, 835
Bse21I CCTNAGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 882
BseGI GGATG 2 cut(s) 469, 839
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 5 cut(s) 116, 459, 477, 513, 681
BseNI ACTGG 3 cut(s) 48, 282, 835
BseRI GAGGAG 2 cut(s) 319, 767
BseXI GCAGC 2 cut(s) 94, 385
BshFI GGCC 3 cut(s) 770, 881, 920
BshNI GGYRCC 1 cut(s) 822
BsiSI CCGG 2 cut(s) 652, 899
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 2 cut(s) 372, 600
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 3 cut(s) 770, 881, 920
Bsp143I GATC 5 cut(s) 157, 250, 280, 744, 774
BspANI GGCC 3 cut(s) 770, 881, 920
BspCNI CTCAG 5 cut(s) 117, 460, 478, 514, 682
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 630, 824, 846
BspPI GGATC 2 cut(s) 288, 769
BspT107I GGYRCC 1 cut(s) 822
BsrDI GCAATG 1 cut(s) 337
BsrI ACTGG 3 cut(s) 48, 282, 835
BssECI CCNNGG 1 cut(s) 882
BssMI GATC 5 cut(s) 157, 250, 280, 744, 774
BssSI CACGAG 2 cut(s) 779, 942
BssT1I CCWWGG 1 cut(s) 882
Bst2BI CACGAG 2 cut(s) 779, 942
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 900
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 8 cut(s) 125, 217, 468, 486, 522, 657, 690, 708
BstF5I GGATG 2 cut(s) 469, 839
BstHHI GCGC 2 cut(s) 330, 818
BstKTI GATC 5 cut(s) 160, 253, 283, 747, 777
BstMAI GTCTC 2 cut(s) 372, 600
BstMBI GATC 5 cut(s) 157, 250, 280, 744, 774
BstMWI GCNNNNNNNGC 3 cut(s) 509, 518, 815
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 651
BstSFI CTRYAG 1 cut(s) 419
BstSNI TACGTA 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 94, 385
BstX2I RGATCY 2 cut(s) 157, 774
BstYI RGATCY 2 cut(s) 157, 774
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 3 cut(s) 770, 881, 920
BtsCI GGATG 2 cut(s) 469, 839
BtsIMutI CAGTG 1 cut(s) 533
Cac8I GCNNGC 1 cut(s) 510
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 330, 818
Cfr13I GGNCC 3 cut(s) 46, 629, 974
CseI GACGC 1 cut(s) 551
Csp6I GTAC 3 cut(s) 71, 349, 823
CviAII CATG 4 cut(s) 296, 513, 851, 875
CviQI GTAC 3 cut(s) 71, 349, 823
DdeI CTNAG 8 cut(s) 125, 217, 468, 486, 522, 657, 690, 708
DpnI GATC 5 cut(s) 159, 252, 282, 746, 776
DpnII GATC 5 cut(s) 157, 250, 280, 744, 774
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 900
EarI CTCTTC 1 cut(s) 900
Eco105I TACGTA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 882
Eco47I GGWCC 3 cut(s) 46, 629, 974
Eco81I CCTNAGG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 882
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 882
FaeI CATG 4 cut(s) 299, 516, 854, 878
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FatI CATG 4 cut(s) 295, 512, 850, 874
Fnu4HI GCNGC 2 cut(s) 83, 374
FokI GGATG 2 cut(s) 476, 846
Fsp4HI GCNGC 2 cut(s) 83, 374
FspI TGCGCA 1 cut(s) 817
GlaI GCGC 2 cut(s) 329, 817
GluI GCNGC 2 cut(s) 83, 374
GsuI CTGGAG 1 cut(s) 935
HaeIII GGCC 3 cut(s) 770, 881, 920
HapII CCGG 2 cut(s) 652, 899
HgaI GACGC 1 cut(s) 551
HhaI GCGC 2 cut(s) 330, 818
Hin1II CATG 4 cut(s) 299, 516, 854, 878
Hin6I GCGC 2 cut(s) 328, 816
HinP1I GCGC 2 cut(s) 328, 816
HindIII AAGCTT 2 cut(s) 591, 713
HinfI GANTC 4 cut(s) 262, 299, 380, 569
HpaII CCGG 2 cut(s) 652, 899
Hpy188I TCNGA 4 cut(s) 633, 749, 763, 965
Hpy188III TCNNGA 8 cut(s) 22, 107, 161, 259, 296, 566, 794, 914
HpyAV CCTTC 4 cut(s) 61, 448, 592, 670
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 2 cut(s) 52, 958
HpyCH4V TGCA 3 cut(s) 176, 503, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 509, 518, 815
HpyF3I CTNAG 8 cut(s) 125, 217, 468, 486, 522, 657, 690, 708
HpySE526I ACGT 2 cut(s) 52, 958
Hsp92II CATG 4 cut(s) 299, 516, 854, 878
HspAI GCGC 2 cut(s) 328, 816
KpnI GGTACC 1 cut(s) 826
Kzo9I GATC 5 cut(s) 157, 250, 280, 744, 774
LmnI GCTCC 3 cut(s) 410, 601, 844
Lsp1109I GCAGC 2 cut(s) 94, 385
LweI GCATC 1 cut(s) 454
MaeII ACGT 2 cut(s) 52, 958
MaeIII GTNAC 1 cut(s) 889
MalI GATC 5 cut(s) 159, 252, 282, 746, 776
MboI GATC 5 cut(s) 157, 250, 280, 744, 774
MboII GAAGA 4 cut(s) 260, 538, 887, 918
MflI RGATCY 2 cut(s) 157, 774
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 7 cut(s) 26, 312, 352, 384, 443, 665, 951
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 3 cut(s) 308, 374, 563
MmeI TCCRAC 1 cut(s) 642
Mox20I TGGCCA 1 cut(s) 770
Mph1103I ATGCAT 1 cut(s) 811
MscI TGGCCA 1 cut(s) 770
MseI TTAA 2 cut(s) 717, 950
MslI CAYNNNNRTG 1 cut(s) 942
Msp20I TGGCCA 1 cut(s) 770
MspI CCGG 2 cut(s) 652, 899
MspR9I CCNGG 2 cut(s) 59, 653
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 509, 518, 815
NciI CCSGG 1 cut(s) 653
NdeII GATC 5 cut(s) 157, 250, 280, 744, 774
NlaIII CATG 4 cut(s) 299, 516, 854, 878
NlaIV GGNNCC 3 cut(s) 630, 824, 846
NsbI TGCGCA 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 811
PagI TCATGA 1 cut(s) 295
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 1 cut(s) 262
PkrI GCNGC 2 cut(s) 84, 375
PleI GAGTC 3 cut(s) 307, 374, 563
PpsI GAGTC 3 cut(s) 307, 374, 563
Ppu21I YACGTR 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 630, 824, 846
PspPI GGNCC 3 cut(s) 46, 629, 974
PsuI RGATCY 2 cut(s) 157, 774
RsaI GTAC 3 cut(s) 72, 350, 824
RsaNI GTAC 3 cut(s) 71, 349, 823
RseI CAYNNNNRTG 1 cut(s) 942
SaqAI TTAA 2 cut(s) 717, 950
SatI GCNGC 2 cut(s) 83, 374
Sau3AI GATC 5 cut(s) 157, 250, 280, 744, 774
Sau96I GGNCC 3 cut(s) 46, 629, 974
SchI GAGTC 3 cut(s) 308, 374, 563
ScrFI CCNGG 2 cut(s) 59, 653
SfaNI GCATC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 419
SinI GGWCC 3 cut(s) 46, 629, 974
SmiMI CAYNNNNRTG 1 cut(s) 942
SmlI CTYRAG 3 cut(s) 105, 131, 161
SmoI CTYRAG 3 cut(s) 105, 131, 161
SnaBI TACGTA 1 cut(s) 53
Sse9I AATT 7 cut(s) 26, 312, 352, 384, 443, 665, 951
SspI AATATT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 57, 651
StyI CCWWGG 1 cut(s) 882
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 2 cut(s) 55, 961
TaqI TCGA 2 cut(s) 148, 302
TasI AATT 7 cut(s) 26, 312, 352, 384, 443, 665, 951
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 262
Tru1I TTAA 2 cut(s) 717, 950
Tru9I TTAA 2 cut(s) 717, 950
TscAI CASTG 1 cut(s) 540
TseI GCWGC 2 cut(s) 82, 373
TspDTI ATGAA 4 cut(s) 20, 261, 867, 893
TspRI CASTG 1 cut(s) 540
VpaK11BI GGWCC 3 cut(s) 46, 629, 974
XapI RAATTY 2 cut(s) 26, 665
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.