Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

73584389 .. 73586392

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAATGAGGGGAACCCTGGTATCCCAGACAATGTTAATCCAGCTGGCACGTGGGAGTGTGAGATATTCACTGTAGCTTCCAGCGCCCTCAACCTACTTTGTTGTTCCAGGTTTGCAATGGTTCCAGCAGGAGAACTTCAATTTGGCAATTTTCATCAAGTTTTACTGAACCTACGTAGCCAGGTTGAGAAGATGGTCAATGAGGAGCAGAAAGCTCTGTTAGAATCTCCAGAGCAAATGGAAGACCTAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAACAAAGATCTTGAGAAAGAACTTGAGAAGAGTGAGGCTCAAAATAAAGAGCTTCACAGTATAGTCTTAGACCAGCTTACAGCCTTGTCAAGCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTTGATCAGGTTGGCTCTCATGAGTCAAGGAGTGAAATTATGACCAAAGAGCACGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCTTAGAGAAGTTGAATACCATTGGAGCAGAGCTAAAGGAGGCGCAAAAAGACTTGGAATTGAGCAGGAATGTCTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAGGCGAAAAAGGCGTGGGAGGCTGAGAGGATGGCACTGACAAGTACAATTTTGACGCACCAGGACTCCACTTGGAAATACAACCAAGCTTTAAAGGAGCGAGACTCAGCCTTGAAGGAGGTCCAAAAAGATTTGTCCAAGTCCCGGGTTGAGTTGGAATCAGGAAAGAAGGACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGGTTCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTAGGCAAGAAGGTGTGGGAGGCTGAGAAGATGGAACTGTCTAAGAAGCTTAACAAGTTTGGAACAGGAAACTCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGAAGCACATTAAAGAAAATGAGAATGCATATTGTACAGGGTACCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGCGAGGCTATGAGGCCGAGGAAGTTACTCTTCCGGTTCACAATCCTCTGGAGGCCACATCCTCACATTCTCATTCTCGTGCCACAATTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

399

Amino Acids

45.4

Weight (kDa)

5.65

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1041
AccB1I	GGYRCC	1 cut(s)	1041
AclWI	GGATC	1 cut(s)	988
AcoI	YGGCCR	1 cut(s)	987
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	479, 667, 1036, 1043
AfiI	CCNNNNNNNGG	2 cut(s)	765, 870
AgsI	TTSAA	4 cut(s)	140, 493, 523, 736
AjnI	CCWGG	4 cut(s)	16, 107, 180, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	2 cut(s)	495, 717
AlwI	GGATC	1 cut(s)	988
Ama87I	CYCGRG	2 cut(s)	765, 870
AoxI	GGCC	3 cut(s)	987, 1098, 1137
ApeKI	GCWGC	1 cut(s)	496
Asp718I	GGTACC	1 cut(s)	1041
AspLEI	GCGC	2 cut(s)	86, 553
AspS9I	GGNCC	3 cut(s)	742, 793, 1193
AsuC2I	CCSGG	4 cut(s)	766, 767, 871, 872
AsuII	TTCGAA	1 cut(s)	850
AvaI	CYCGRG	2 cut(s)	765, 870
AvaII	GGWCC	3 cut(s)	742, 793, 1193
BaeI	ACNNNNGTAYC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	1041
BauI	CACGAG	2 cut(s)	998, 1161
BbrPI	CACGTG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	4 cut(s)	187, 455, 646, 910
BciT130I	CCWGG	4 cut(s)	18, 109, 182, 683
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	409
BcnI	CCSGG	4 cut(s)	766, 767, 871, 872
BcoDI	GTCTC	2 cut(s)	495, 717
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	32
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	1 cut(s)	497
BlsI	GCNGC	1 cut(s)	498
Bme1390I	CCNGG	8 cut(s)	18, 109, 182, 683, 766, 767, 871, 872
Bme18I	GGWCC	3 cut(s)	742, 793, 1193
BmeT110I	CYCGRG	2 cut(s)	765, 870
BmgT120I	GGNCC	3 cut(s)	742, 793, 1193
BmiI	GGNNCC	4 cut(s)	14, 123, 1043, 1065
BmrFI	CCNGG	8 cut(s)	18, 109, 182, 683, 766, 767, 871, 872
BmrI	ACTGGG	1 cut(s)	1059
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	1059
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	4 cut(s)	301, 333, 710, 742
BpmI	CTGGAG	2 cut(s)	213, 1154
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	3 cut(s)	281, 311, 323
BpuMI	CCSGG	4 cut(s)	766, 767, 871, 872
BsaAI	YACGTR	2 cut(s)	51, 176
BsaJI	CCNNGG	4 cut(s)	16, 765, 870, 1101
BsaWI	WCCGGW	1 cut(s)	1117
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	765, 870
Bse1I	ACTGG	1 cut(s)	1054
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	4 cut(s)	18, 109, 182, 683
BseDI	CCNNGG	4 cut(s)	16, 765, 870, 1101
BseGI	GGATG	3 cut(s)	592, 657, 1142
BseLI	CCNNNNNNNGG	2 cut(s)	765, 870
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	7 cut(s)	519, 582, 600, 636, 741, 900, 979
BseNI	ACTGG	1 cut(s)	1054
BseRI	GAGGAG	2 cut(s)	218, 986
BseXI	GCAGC	1 cut(s)	508
BshFI	GGCC	3 cut(s)	989, 1100, 1139
BshNI	GGYRCC	1 cut(s)	1041
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	2 cut(s)	765, 870
BsiSI	CCGG	3 cut(s)	766, 871, 1118
BslFI	GGGAC	2 cut(s)	748, 853
BslI	CCNNNNNNNGG	2 cut(s)	765, 870
BsmAI	GTCTC	2 cut(s)	495, 717
BsmFI	GGGAC	2 cut(s)	748, 853
BsmI	GAATGC	1 cut(s)	1030
BsnI	GGCC	3 cut(s)	989, 1100, 1139
BsoBI	CYCGRG	2 cut(s)	765, 870
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	1034
Bsp143I	GATC	5 cut(s)	286, 379, 409, 961, 993
BspANI	GGCC	3 cut(s)	989, 1100, 1139
BspCNI	CTCAG	7 cut(s)	518, 583, 601, 637, 740, 901, 978
BspHI	TCATGA	2 cut(s)	424, 1069
BspLI	GGNNCC	4 cut(s)	14, 123, 1043, 1065
BspPI	GGATC	1 cut(s)	988
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	1 cut(s)	1041
BsrDI	GCAATG	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	1034
BsrI	ACTGG	1 cut(s)	1054
BssECI	CCNNGG	4 cut(s)	16, 765, 870, 1101
BssMI	GATC	5 cut(s)	286, 379, 409, 961, 993
BssSI	CACGAG	2 cut(s)	998, 1161
Bst2BI	CACGAG	2 cut(s)	998, 1161
Bst2UI	CCWGG	4 cut(s)	18, 109, 182, 683
Bst4CI	ACNGT	3 cut(s)	73, 338, 924
Bst6I	CTCTTC	2 cut(s)	302, 1119
BstAUI	TGTACA	1 cut(s)	1034
BstBAI	YACGTR	2 cut(s)	51, 176
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	46
BstF5I	GGATG	3 cut(s)	592, 657, 1142
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 553
BstKTI	GATC	5 cut(s)	289, 382, 412, 964, 996
BstMAI	GTCTC	2 cut(s)	495, 717
BstMBI	GATC	5 cut(s)	286, 379, 409, 961, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 471, 632, 641
BstNI	CCWGG	4 cut(s)	18, 109, 182, 683
BstSCI	CCNGG	8 cut(s)	16, 107, 180, 681, 764, 765, 869, 870
BstSFI	CTRYAG	1 cut(s)	72
BstSNI	TACGTA	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	508
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	286, 993
BstYI	RGATCY	2 cut(s)	286, 993
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	989, 1100, 1139
BtsCI	GGATG	3 cut(s)	592, 657, 1142
BtsIMutI	CAGTG	2 cut(s)	69, 656
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	2 cut(s)	424, 1069
CfoI	GCGC	2 cut(s)	86, 553
Cfr13I	GGNCC	3 cut(s)	742, 793, 1193
Cfr9I	CCCGGG	2 cut(s)	765, 870
CseI	GACGC	1 cut(s)	685
Csp6I	GTAC	4 cut(s)	478, 666, 1035, 1042
CviAII	CATG	3 cut(s)	425, 808, 1070
CviQI	GTAC	4 cut(s)	478, 666, 1035, 1042
DpnI	GATC	5 cut(s)	288, 381, 411, 963, 995
DpnII	GATC	5 cut(s)	286, 379, 409, 961, 993
DraI	TTTAAA	1 cut(s)	714
EaeI	YGGCCR	1 cut(s)	987
Eam1104I	CTCTTC	2 cut(s)	302, 1119
EarI	CTCTTC	2 cut(s)	302, 1119
Eco105I	TACGTA	1 cut(s)	176
Eco47I	GGWCC	3 cut(s)	742, 793, 1193
Eco72I	CACGTG	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	765, 870
EcoO109I	RGGNCCY	1 cut(s)	793
EcoRII	CCWGG	4 cut(s)	16, 107, 180, 681
EcoT22I	ATGCAT	1 cut(s)	1030
FaeI	CATG	3 cut(s)	428, 811, 1073
FalI	AAGNNNNNCTT	2 cut(s)	1098, 1130
FaqI	GGGAC	2 cut(s)	748, 853
FatI	CATG	3 cut(s)	424, 807, 1069
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	497
FokI	GGATG	3 cut(s)	599, 664, 1129
Fsp4HI	GCNGC	1 cut(s)	497
GlaI	GCGC	2 cut(s)	85, 552
GluI	GCNGC	1 cut(s)	497
GsuI	CTGGAG	2 cut(s)	213, 1154
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	989, 1100, 1139
HapII	CCGG	3 cut(s)	766, 871, 1118
HgaI	GACGC	1 cut(s)	685
HhaI	GCGC	2 cut(s)	86, 553
Hin1II	CATG	3 cut(s)	428, 811, 1073
Hin6I	GCGC	2 cut(s)	84, 551
HinP1I	GCGC	2 cut(s)	84, 551
HindIII	AAGCTT	2 cut(s)	708, 932
HinfI	GANTC	7 cut(s)	224, 391, 428, 503, 686, 725, 779
HpaII	CCGG	3 cut(s)	766, 871, 1118
Hpy166II	GTNNAC	1 cut(s)	1123
Hpy188I	TCNGA	3 cut(s)	961, 968, 1184
Hpy188III	TCNNGA	7 cut(s)	230, 290, 388, 425, 783, 1070, 1133
Hpy8I	GTNNAC	1 cut(s)	1123
HpyAV	CCTTC	3 cut(s)	730, 784, 889
HpyCH4III	ACNGT	3 cut(s)	73, 338, 924
HpyCH4IV	ACGT	3 cut(s)	50, 175, 1177
HpyCH4V	TGCA	2 cut(s)	116, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 471, 632, 641
HpySE526I	ACGT	3 cut(s)	50, 175, 1177
Hsp92II	CATG	3 cut(s)	428, 811, 1073
HspAI	GCGC	2 cut(s)	84, 551
KpnI	GGTACC	1 cut(s)	1045
Ksp22I	TGATCA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	286, 379, 409, 961, 993
LmnI	GCTCC	5 cut(s)	205, 533, 718, 830, 1063
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	1 cut(s)	577
MaeII	ACGT	3 cut(s)	50, 175, 1177
MaeIII	GTNAC	1 cut(s)	1108
MalI	GATC	5 cut(s)	288, 381, 411, 963, 995
MboI	GATC	5 cut(s)	286, 379, 409, 961, 993
MboII	GAAGA	6 cut(s)	202, 254, 319, 389, 925, 1106
MflI	RGATCY	2 cut(s)	286, 993
MhlI	GDGCHC	1 cut(s)	459
MlsI	TGGCCA	1 cut(s)	989
MluCI	AATT	7 cut(s)	140, 148, 441, 566, 669, 884, 1170
MluNI	TGGCCA	1 cut(s)	989
MlyI	GAGTC	4 cut(s)	437, 497, 680, 719
MmeI	TCCRAC	2 cut(s)	756, 861
Mox20I	TGGCCA	1 cut(s)	989
Mph1103I	ATGCAT	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	989
MseI	TTAA	4 cut(s)	36, 713, 936, 1011
MslI	CAYNNNNRTG	2 cut(s)	806, 1161
Msp20I	TGGCCA	1 cut(s)	989
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	3 cut(s)	766, 871, 1118
MspR9I	CCNGG	8 cut(s)	18, 109, 182, 683, 766, 767, 871, 872
Mva1269I	GAATGC	1 cut(s)	1030
MvaI	CCWGG	4 cut(s)	18, 109, 182, 683
MwoI	GCNNNNNNNGC	4 cut(s)	83, 471, 632, 641
NciI	CCSGG	4 cut(s)	766, 767, 871, 872
NdeII	GATC	5 cut(s)	286, 379, 409, 961, 993
NlaIII	CATG	3 cut(s)	428, 811, 1073
NlaIV	GGNNCC	4 cut(s)	14, 123, 1043, 1065
NmeAIII	GCCGAG	1 cut(s)	1126
NsiI	ATGCAT	1 cut(s)	1030
NspV	TTCGAA	1 cut(s)	850
PagI	TCATGA	2 cut(s)	424, 1069
PctI	GAATGC	1 cut(s)	1030
PfeI	GAWTC	3 cut(s)	224, 391, 779
PkrI	GCNGC	1 cut(s)	498
PleI	GAGTC	4 cut(s)	436, 497, 680, 719
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
PpsI	GAGTC	4 cut(s)	436, 497, 680, 719
Ppu21I	YACGTR	2 cut(s)	51, 176
PpuMI	RGGWCCY	1 cut(s)	793
Psp5II	RGGWCCY	1 cut(s)	793
Psp6I	CCWGG	4 cut(s)	16, 107, 180, 681
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	4 cut(s)	16, 107, 180, 681
PspN4I	GGNNCC	4 cut(s)	14, 123, 1043, 1065
PspPI	GGNCC	3 cut(s)	742, 793, 1193
PspPPI	RGGWCCY	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	286, 993
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	479, 667, 1036, 1043
RsaNI	GTAC	4 cut(s)	478, 666, 1035, 1042
RseI	CAYNNNNRTG	2 cut(s)	806, 1161
SaqAI	TTAA	4 cut(s)	36, 713, 936, 1011
SatI	GCNGC	1 cut(s)	497
Sau3AI	GATC	5 cut(s)	286, 379, 409, 961, 993
Sau96I	GGNCC	3 cut(s)	742, 793, 1193
SchI	GAGTC	4 cut(s)	437, 497, 680, 719
ScrFI	CCNGG	8 cut(s)	18, 109, 182, 683, 766, 767, 871, 872
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	3 cut(s)	742, 793, 1193
SmaI	CCCGGG	2 cut(s)	767, 872
SmiMI	CAYNNNNRTG	2 cut(s)	806, 1161
SmlI	CTYRAG	3 cut(s)	260, 290, 302
SmoI	CTYRAG	3 cut(s)	260, 290, 302
SnaBI	TACGTA	1 cut(s)	176
Sse9I	AATT	7 cut(s)	140, 148, 441, 566, 669, 884, 1170
StyD4I	CCNGG	8 cut(s)	16, 107, 180, 681, 764, 765, 869, 870
TaaI	ACNGT	3 cut(s)	73, 338, 924
TaiI	ACGT	3 cut(s)	53, 178, 1180
TaqI	TCGA	1 cut(s)	850
TasI	AATT	7 cut(s)	140, 148, 441, 566, 669, 884, 1170
TatI	WGTACW	3 cut(s)	477, 665, 1034
TfiI	GAWTC	3 cut(s)	224, 391, 779
Tru1I	TTAA	4 cut(s)	36, 713, 936, 1011
Tru9I	TTAA	4 cut(s)	36, 713, 936, 1011
TscAI	CASTG	2 cut(s)	76, 663
TseI	GCWGC	1 cut(s)	496
TspDTI	ATGAA	5 cut(s)	17, 143, 390, 824, 1086
TspMI	CCCGGG	2 cut(s)	765, 870
TspRI	CASTG	2 cut(s)	76, 663
VpaK11BI	GGWCC	3 cut(s)	742, 793, 1193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	48, 115
XmaI	CCCGGG	2 cut(s)	765, 870
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.